Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6975 and GFF6976 are separated by 755 nucleotides GFF6976 and GFF6977 are separated by 13 nucleotides GFF6977 and GFF6978 are separated by 11 nucleotides
GFF6975 - no description, at 47,719 to 48,168
GFF6975
GFF6976 - Nodulin-related protein CC_0717, at 48,924 to 49,631
GFF6976
GFF6977 - Cytochrome b561, at 49,645 to 50,202
GFF6977
GFF6978 - no description, at 50,214 to 50,915
GFF6978
Position (kb) 48
49
50 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 47.939 kb on - strand, within GFF6975 at 48.283 kb on - strand at 48.510 kb on - strand at 48.510 kb on - strand at 48.617 kb on + strand at 48.617 kb on + strand at 48.618 kb on - strand at 48.767 kb on + strand at 48.768 kb on - strand at 49.080 kb on + strand, within GFF6976 at 49.080 kb on + strand, within GFF6976 at 49.080 kb on + strand, within GFF6976 at 49.081 kb on - strand, within GFF6976 at 49.081 kb on - strand, within GFF6976 at 49.081 kb on - strand, within GFF6976 at 49.288 kb on + strand, within GFF6976 at 49.288 kb on + strand, within GFF6976 at 49.289 kb on - strand, within GFF6976 at 49.310 kb on - strand, within GFF6976 at 49.700 kb on + strand at 49.700 kb on + strand at 49.746 kb on - strand, within GFF6977 at 50.109 kb on + strand, within GFF6977 at 50.109 kb on + strand, within GFF6977 at 50.117 kb on + strand, within GFF6977 at 50.118 kb on - strand, within GFF6977 at 50.118 kb on - strand, within GFF6977 at 50.428 kb on + strand, within GFF6978
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 47,939 - GFF6975 0.49 -0.6 48,283 - -0.1 48,510 - -0.8 48,510 - -0.6 48,617 + -1.4 48,617 + +0.8 48,618 - +1.7 48,767 + -0.4 48,768 - -1.4 49,080 + GFF6976 0.22 -0.4 49,080 + GFF6976 0.22 -1.9 49,080 + GFF6976 0.22 -1.6 49,081 - GFF6976 0.22 -2.5 49,081 - GFF6976 0.22 -0.1 49,081 - GFF6976 0.22 -3.6 49,288 + GFF6976 0.51 -0.2 49,288 + GFF6976 0.51 -1.5 49,289 - GFF6976 0.52 +0.6 49,310 - GFF6976 0.55 -0.7 49,700 + +1.5 49,700 + +3.6 49,746 - GFF6977 0.18 -2.3 50,109 + GFF6977 0.83 +0.3 50,109 + GFF6977 0.83 -1.2 50,117 + GFF6977 0.85 -2.8 50,118 - GFF6977 0.85 -0.5 50,118 - GFF6977 0.85 +0.2 50,428 + GFF6978 0.30 +0.9
Or see this region's nucleotide sequence