Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6951 and GFF6952 are separated by 21 nucleotides GFF6952 and GFF6953 are separated by 7 nucleotides
GFF6951 - Alcohol dehydrogenase (EC 1.1.1.1), at 27,140 to 28,129
GFF6951
GFF6952 - Metallo-beta-lactamase family protein, RNA-specific, at 28,151 to 29,503
GFF6952
GFF6953 - Universal stress protein UspA and related nucleotide-binding proteins, at 29,511 to 30,335
GFF6953
Position (kb) 28
29
30 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 27.168 kb on + strand at 27.168 kb on + strand at 27.169 kb on - strand at 27.400 kb on - strand, within GFF6951 at 27.459 kb on + strand, within GFF6951 at 27.460 kb on - strand, within GFF6951 at 27.643 kb on + strand, within GFF6951 at 27.644 kb on - strand, within GFF6951 at 27.644 kb on - strand, within GFF6951 at 27.646 kb on - strand, within GFF6951 at 27.646 kb on - strand, within GFF6951 at 27.734 kb on - strand, within GFF6951 at 27.734 kb on - strand, within GFF6951 at 27.734 kb on - strand, within GFF6951 at 27.734 kb on - strand, within GFF6951 at 27.793 kb on + strand, within GFF6951 at 28.049 kb on + strand at 28.050 kb on - strand at 28.368 kb on + strand, within GFF6952 at 28.369 kb on - strand, within GFF6952 at 28.369 kb on - strand, within GFF6952 at 28.650 kb on + strand, within GFF6952 at 28.650 kb on + strand, within GFF6952 at 28.651 kb on - strand, within GFF6952 at 28.659 kb on + strand, within GFF6952 at 28.659 kb on + strand, within GFF6952 at 28.660 kb on - strand, within GFF6952 at 28.878 kb on + strand, within GFF6952 at 28.878 kb on + strand, within GFF6952 at 28.878 kb on + strand, within GFF6952 at 28.879 kb on - strand, within GFF6952 at 28.879 kb on - strand, within GFF6952 at 28.879 kb on - strand, within GFF6952 at 28.899 kb on + strand, within GFF6952 at 28.899 kb on + strand, within GFF6952 at 28.900 kb on - strand, within GFF6952 at 28.900 kb on - strand, within GFF6952 at 29.018 kb on + strand, within GFF6952 at 29.018 kb on + strand, within GFF6952 at 29.018 kb on + strand, within GFF6952 at 29.018 kb on + strand, within GFF6952 at 29.019 kb on - strand, within GFF6952 at 29.019 kb on - strand, within GFF6952 at 29.130 kb on + strand, within GFF6952 at 29.131 kb on - strand, within GFF6952 at 29.131 kb on - strand, within GFF6952 at 29.295 kb on - strand, within GFF6952 at 29.728 kb on + strand, within GFF6953 at 29.729 kb on - strand, within GFF6953 at 29.729 kb on - strand, within GFF6953 at 29.899 kb on + strand, within GFF6953 at 30.019 kb on + strand, within GFF6953 at 30.019 kb on + strand, within GFF6953 at 30.019 kb on + strand, within GFF6953 at 30.019 kb on + strand, within GFF6953 at 30.019 kb on + strand, within GFF6953 at 30.020 kb on - strand, within GFF6953 at 30.020 kb on - strand, within GFF6953 at 30.020 kb on - strand, within GFF6953 at 30.022 kb on - strand, within GFF6953 at 30.187 kb on + strand, within GFF6953 at 30.187 kb on + strand, within GFF6953
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 27,168 + -2.9 27,168 + -0.4 27,169 - -1.0 27,400 - GFF6951 0.26 +0.1 27,459 + GFF6951 0.32 -2.1 27,460 - GFF6951 0.32 +0.8 27,643 + GFF6951 0.51 +1.6 27,644 - GFF6951 0.51 -0.5 27,644 - GFF6951 0.51 +0.4 27,646 - GFF6951 0.51 -1.7 27,646 - GFF6951 0.51 +0.4 27,734 - GFF6951 0.60 -2.1 27,734 - GFF6951 0.60 -0.2 27,734 - GFF6951 0.60 -0.6 27,734 - GFF6951 0.60 +0.9 27,793 + GFF6951 0.66 -0.4 28,049 + -0.9 28,050 - -0.2 28,368 + GFF6952 0.16 +0.8 28,369 - GFF6952 0.16 -0.2 28,369 - GFF6952 0.16 -0.4 28,650 + GFF6952 0.37 -0.4 28,650 + GFF6952 0.37 +1.5 28,651 - GFF6952 0.37 +0.1 28,659 + GFF6952 0.38 +0.4 28,659 + GFF6952 0.38 +0.1 28,660 - GFF6952 0.38 -0.8 28,878 + GFF6952 0.54 +0.5 28,878 + GFF6952 0.54 -1.6 28,878 + GFF6952 0.54 -1.5 28,879 - GFF6952 0.54 +0.4 28,879 - GFF6952 0.54 -1.7 28,879 - GFF6952 0.54 -1.4 28,899 + GFF6952 0.55 -3.9 28,899 + GFF6952 0.55 +1.0 28,900 - GFF6952 0.55 -0.4 28,900 - GFF6952 0.55 +0.3 29,018 + GFF6952 0.64 -1.0 29,018 + GFF6952 0.64 -0.1 29,018 + GFF6952 0.64 +0.3 29,018 + GFF6952 0.64 +1.6 29,019 - GFF6952 0.64 +1.1 29,019 - GFF6952 0.64 -0.2 29,130 + GFF6952 0.72 -0.7 29,131 - GFF6952 0.72 -0.4 29,131 - GFF6952 0.72 -1.0 29,295 - GFF6952 0.85 +4.2 29,728 + GFF6953 0.26 +0.1 29,729 - GFF6953 0.26 +0.7 29,729 - GFF6953 0.26 -3.7 29,899 + GFF6953 0.47 +0.2 30,019 + GFF6953 0.62 -2.3 30,019 + GFF6953 0.62 -1.9 30,019 + GFF6953 0.62 +0.4 30,019 + GFF6953 0.62 -2.7 30,019 + GFF6953 0.62 +0.2 30,020 - GFF6953 0.62 +0.4 30,020 - GFF6953 0.62 +0.2 30,020 - GFF6953 0.62 -0.3 30,022 - GFF6953 0.62 -0.8 30,187 + GFF6953 0.82 +0.8 30,187 + GFF6953 0.82 -0.8
Or see this region's nucleotide sequence