Strain Fitness in Variovorax sp. SCN45 around GFF6925

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
2,817	+		GFF6923	0.70	+0.4
2,818	-		GFF6923	0.70	+0.1
2,982	+		GFF6923	0.80	+0.7
2,982	+		GFF6923	0.80	-0.6
2,983	-		GFF6923	0.80	+1.5
2,997	+		GFF6923	0.81	+1.7
3,051	+		GFF6923	0.84	-0.9
3,052	-		GFF6923	0.84	-0.7
3,052	-		GFF6923	0.84	-0.6
3,052	-		GFF6923	0.84	+0.3
3,109	-		GFF6923	0.87	-1.6
3,109	-		GFF6923	0.87	+1.0
3,109	-		GFF6923	0.87	-0.6
3,109	-		GFF6923	0.87	-1.7
3,404	+		GFF6924	0.24	+1.5
3,404	+		GFF6924	0.24	-0.2
3,405	-		GFF6924	0.24	-0.4
3,405	-		GFF6924	0.24	-1.7
3,407	+		GFF6924	0.25	-0.2
3,407	+		GFF6924	0.25	-2.9
3,408	-		GFF6924	0.25	+1.1
3,408	-		GFF6924	0.25	-0.6
3,408	-		GFF6924	0.25	-0.1
3,536	+		GFF6924	0.65	-1.4
3,803	+				+2.0
3,804	-				-0.7
3,980	+		GFF6925	0.11	+0.4
4,109	+		GFF6925	0.17	-0.4
4,109	+		GFF6925	0.17	-0.9
4,193	+		GFF6925	0.22	+1.6
4,193	+		GFF6925	0.22	+0.3
4,194	-		GFF6925	0.22	-0.4
4,194	-		GFF6925	0.22	-2.2
4,194	-		GFF6925	0.22	-2.0
4,194	-		GFF6925	0.22	-0.4
4,194	-		GFF6925	0.22	+2.1
4,194	-		GFF6925	0.22	+1.2
4,194	-		GFF6925	0.22	+0.7
4,566	-		GFF6925	0.40	-0.9
4,721	+		GFF6925	0.48	-0.2
4,721	+		GFF6925	0.48	-0.7
4,721	+		GFF6925	0.48	-0.2
4,722	-		GFF6925	0.48	+0.1
4,722	-		GFF6925	0.48	-0.9
4,722	-		GFF6925	0.48	-2.8
4,722	-		GFF6925	0.48	-1.7
4,722	-		GFF6925	0.48	-1.2
4,722	-		GFF6925	0.48	-0.6
4,784	+		GFF6925	0.51	+0.1
4,841	+		GFF6925	0.54	+0.2
4,841	+		GFF6925	0.54	-1.1
5,252	+		GFF6925	0.75	-1.9
5,809	-				-2.2
6,039	+		GFF6926	0.32	-1.2
6,039	+		GFF6926	0.32	+1.3
6,039	+		GFF6926	0.32	+0.1
6,039	+		GFF6926	0.32	+1.0
6,039	+		GFF6926	0.32	+0.4
6,039	+		GFF6926	0.32	+0.7
6,039	+		GFF6926	0.32	+0.1
6,039	+		GFF6926	0.32	-1.2
6,040	-		GFF6926	0.32	-0.1
6,040	-		GFF6926	0.32	+1.8
6,040	-		GFF6926	0.32	+0.1
6,040	-		GFF6926	0.32	-2.8
6,040	-		GFF6926	0.32	-0.9
6,040	-		GFF6926	0.32	-0.5
6,040	-		GFF6926	0.32	+2.2
6,040	-		GFF6926	0.32	-0.6
6,087	+		GFF6926	0.37	-0.2
6,087	+		GFF6926	0.37	+0.9
6,186	+		GFF6926	0.48	+0.8
6,187	-		GFF6926	0.49	-0.7
6,478	-		GFF6926	0.81	-0.4
6,478	-		GFF6926	0.81	+0.4
6,478	-		GFF6926	0.81	+1.4
6,531	+		GFF6926	0.87	-1.2
6,532	-		GFF6926	0.87	-0.4
6,588	+				-1.3
6,588	+				+0.2
6,588	+				-2.3
6,588	+				+0.9
6,588	+				-0.6
6,588	+				+2.7
6,589	-				-0.2
6,589	-				-0.2
6,589	-				-1.5
6,589	-				-0.2