Strain Fitness in Variovorax sp. SCN45 around GFF6898

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
30,209	+				+2.3
30,209	+				+2.3
30,209	+				-0.3
30,209	+				+2.3
30,210	-				-1.3
30,210	-				+2.6
30,210	-				-2.8
30,285	+				-1.3
30,286	-				-0.3
30,286	-				+0.0
30,286	-				-0.8
30,295	+				+2.3
30,295	+				+2.3
30,295	+				+2.3
30,296	-				-0.8
30,296	-				-0.8
30,296	-				+1.6
30,296	-				-0.9
30,296	-				+0.0
30,296	-				-0.7
30,296	-				-1.0
30,296	-				-1.0
30,298	-				+0.0
30,298	-				+0.6
30,315	+				+1.3
30,315	+				+2.3
30,315	+				+5.8
30,315	+				+2.3
30,315	+				+2.3
30,316	-				-2.1
30,316	-				+0.7
30,338	-				+0.6
30,339	+				-0.5
30,339	+				+1.3
30,339	+				+1.8
30,339	+				+2.3
30,340	-				-0.0
30,340	-				+0.5
30,340	-				-1.3
30,340	-				-0.1
30,340	-				-2.5
30,340	-				+0.9
30,340	-				+2.2
30,340	-				-0.5
30,343	+				+2.3
30,343	+				+1.3
30,343	+				+0.3
30,344	-				+0.9
30,344	-				-2.3
30,344	-				+0.3
30,369	+				+0.4
30,369	+				+0.2
30,369	+				+0.8
30,371	+				-1.4
30,371	+				+0.7
30,371	+				+1.7
30,372	-				-0.3
30,372	-				+0.7
30,446	+				+2.3
30,446	+				-1.4
30,663	+				-1.0
30,663	+				+0.7
30,663	+				-1.1
30,663	+				-1.3
30,663	+				+0.0
30,663	+				-1.4
30,663	+				-1.0
30,663	+				-2.1
30,663	+				+0.9
30,663	+				-1.1
30,664	-				-0.1
30,664	-				+1.7
30,664	-				-0.4
30,664	-				-0.7
30,809	+		GFF6898	0.13	+3.0
30,885	+		GFF6898	0.16	-0.4
30,885	+		GFF6898	0.16	-3.2
30,885	+		GFF6898	0.16	-4.0
30,885	+		GFF6898	0.16	+1.5
30,886	-		GFF6898	0.16	+0.7
30,886	-		GFF6898	0.16	+1.3
31,053	+		GFF6898	0.22	+0.1
31,053	+		GFF6898	0.22	-1.8
31,053	+		GFF6898	0.22	+2.3
31,054	-		GFF6898	0.23	-1.0
31,054	-		GFF6898	0.23	-1.0
31,054	-		GFF6898	0.23	-2.6
31,054	-		GFF6898	0.23	+0.0
31,054	-		GFF6898	0.23	-0.2
31,054	-		GFF6898	0.23	-0.1
31,054	-		GFF6898	0.23	-1.1
31,167	+		GFF6898	0.27	+1.1
31,168	-		GFF6898	0.27	+0.6
31,581	+		GFF6898	0.43	-0.3
31,687	-		GFF6898	0.47	-2.1
31,687	-		GFF6898	0.47	-3.0
31,740	+		GFF6898	0.49	-0.1
31,740	+		GFF6898	0.49	-1.5
31,740	+		GFF6898	0.49	+0.2
31,740	+		GFF6898	0.49	+0.9
31,740	+		GFF6898	0.49	+0.7
31,740	+		GFF6898	0.49	-0.7
31,740	+		GFF6898	0.49	+0.9
31,740	+		GFF6898	0.49	-2.6
31,741	-		GFF6898	0.49	+1.6
31,741	-		GFF6898	0.49	+0.5
31,741	-		GFF6898	0.49	+1.5
31,741	-		GFF6898	0.49	-1.9
31,741	-		GFF6898	0.49	+0.2
31,741	-		GFF6898	0.49	-1.5
31,741	-		GFF6898	0.49	+1.0
31,741	-		GFF6898	0.49	-2.0
31,755	+		GFF6898	0.49	+0.2
31,755	+		GFF6898	0.49	+1.8
31,755	+		GFF6898	0.49	-1.8
31,755	+		GFF6898	0.49	+0.0
31,755	+		GFF6898	0.49	+1.7
31,755	+		GFF6898	0.49	-0.7
31,755	+		GFF6898	0.49	+0.3
31,755	+		GFF6898	0.49	-1.0
31,755	+		GFF6898	0.49	+0.5
31,755	+		GFF6898	0.49	+1.8
31,755	+		GFF6898	0.49	+0.7
31,756	-		GFF6898	0.49	-0.3
31,756	-		GFF6898	0.49	+1.8
31,756	-		GFF6898	0.49	+1.5
31,761	+		GFF6898	0.49	-1.0
31,761	+		GFF6898	0.49	+1.3
31,761	+		GFF6898	0.49	-0.5
31,761	+		GFF6898	0.49	+1.3
31,762	-		GFF6898	0.49	-1.2
31,813	-		GFF6898	0.51	+0.0
31,872	+		GFF6898	0.54	+0.6
31,872	+		GFF6898	0.54	+1.9
31,872	+		GFF6898	0.54	-0.3
31,873	-		GFF6898	0.54	-0.3
31,873	-		GFF6898	0.54	-2.1
31,873	-		GFF6898	0.54	-0.7
31,873	-		GFF6898	0.54	+2.2
31,873	-		GFF6898	0.54	+0.2
31,911	+		GFF6898	0.55	+1.0
31,911	+		GFF6898	0.55	-1.3
31,911	+		GFF6898	0.55	-2.3
31,911	+		GFF6898	0.55	-0.7
31,912	-		GFF6898	0.55	-1.4
31,912	-		GFF6898	0.55	-0.3
31,912	-		GFF6898	0.55	-0.8
31,912	-		GFF6898	0.55	-1.6
31,983	+		GFF6898	0.58	-1.7
31,983	+		GFF6898	0.58	-0.8
31,984	-		GFF6898	0.58	-0.7
31,984	-		GFF6898	0.58	+0.0
31,984	-		GFF6898	0.58	+0.6
31,984	-		GFF6898	0.58	-0.2
31,984	-		GFF6898	0.58	-0.3
31,989	+		GFF6898	0.58	+0.1
31,989	+		GFF6898	0.58	-0.3
31,989	+		GFF6898	0.58	+0.9
31,990	-		GFF6898	0.58	-0.4
31,990	-		GFF6898	0.58	-0.5
31,990	-		GFF6898	0.58	+0.8
31,990	-		GFF6898	0.58	-0.4
31,990	-		GFF6898	0.58	-1.5
31,990	-		GFF6898	0.58	-1.5
32,073	+		GFF6898	0.61	-1.8
32,073	+		GFF6898	0.61	-1.4
32,073	+		GFF6898	0.61	-0.7
32,073	+		GFF6898	0.61	-2.3
32,074	-		GFF6898	0.61	+0.3
32,343	+		GFF6898	0.71	-0.1
32,343	+		GFF6898	0.71	-2.1
32,343	+		GFF6898	0.71	-1.1
32,343	+		GFF6898	0.71	+0.0
32,343	+		GFF6898	0.71	-2.6
32,344	-		GFF6898	0.72	-0.2
32,344	-		GFF6898	0.72	+0.7
32,344	-		GFF6898	0.72	-1.6
32,344	-		GFF6898	0.72	+0.9
32,344	-		GFF6898	0.72	-1.4
32,344	-		GFF6898	0.72	+0.2
32,541	+		GFF6898	0.79	+0.7
32,541	+		GFF6898	0.79	+0.8
32,541	+		GFF6898	0.79	+1.5
32,541	+		GFF6898	0.79	-2.4
32,541	+		GFF6898	0.79	+0.7
32,541	+		GFF6898	0.79	-0.0
32,542	-		GFF6898	0.79	+0.3
32,542	-		GFF6898	0.79	-1.8
32,542	-		GFF6898	0.79	+1.2
32,542	-		GFF6898	0.79	+1.6
32,542	-		GFF6898	0.79	+0.3
32,542	-		GFF6898	0.79	+0.7
32,542	-		GFF6898	0.79	-0.8
32,622	+		GFF6898	0.82	-2.0
32,622	+		GFF6898	0.82	+1.2
32,623	-		GFF6898	0.82	+0.2
32,623	-		GFF6898	0.82	-0.3
32,775	-		GFF6898	0.88	-0.8
32,775	-		GFF6898	0.88	-2.8
32,802	+		GFF6898	0.89	-2.3
32,802	+		GFF6898	0.89	+1.4
32,802	+		GFF6898	0.89	-3.2
32,803	-		GFF6898	0.89	-1.2
32,884	+				-0.4
32,916	+				-1.4
32,916	+				-3.8
32,917	-				-0.3
32,917	-				-2.1
32,917	-				+0.5
32,917	-				-0.6
32,917	-				+0.9
32,961	+				+0.0
33,030	+				-1.1
33,030	+				-3.2
33,030	+				+0.9
33,031	-				-1.1
33,031	-				-0.6
33,031	-				+4.3
33,356	+		GFF6899	0.13	-0.3
33,461	+		GFF6899	0.18	-1.6
33,461	+		GFF6899	0.18	-1.4
33,461	+		GFF6899	0.18	+0.0
33,462	-		GFF6899	0.18	-3.3
33,462	-		GFF6899	0.18	-0.4
33,462	-		GFF6899	0.18	-1.1
33,462	-		GFF6899	0.18	-0.1
33,462	-		GFF6899	0.18	-0.5
33,462	-		GFF6899	0.18	-0.5
33,462	-		GFF6899	0.18	+0.7
33,491	+		GFF6899	0.19	+1.0
33,491	+		GFF6899	0.19	-1.4
33,491	+		GFF6899	0.19	-2.1
33,491	+		GFF6899	0.19	-1.6
33,492	-		GFF6899	0.19	-1.1
33,492	-		GFF6899	0.19	-1.0
33,492	-		GFF6899	0.19	-1.3
33,497	+		GFF6899	0.20	-0.8
33,497	+		GFF6899	0.20	-0.6
33,497	+		GFF6899	0.20	-0.2
33,497	+		GFF6899	0.20	+0.1
33,497	+		GFF6899	0.20	-0.3
33,497	+		GFF6899	0.20	-2.8
33,498	-		GFF6899	0.20	+0.3
33,498	-		GFF6899	0.20	-0.5
33,498	-		GFF6899	0.20	+0.5
33,498	-		GFF6899	0.20	+1.3
33,726	-		GFF6899	0.31	-1.4
33,747	-		GFF6899	0.32	-1.3
33,747	-		GFF6899	0.32	+0.7
33,764	+		GFF6899	0.32	+1.3
33,764	+		GFF6899	0.32	-0.8
33,764	+		GFF6899	0.32	-0.6
33,764	+		GFF6899	0.32	+0.6
33,764	+		GFF6899	0.32	-1.9
33,764	+		GFF6899	0.32	+0.5
33,764	+		GFF6899	0.32	-0.6
33,764	+		GFF6899	0.32	-0.3
33,764	+		GFF6899	0.32	-0.5
33,765	-		GFF6899	0.33	-0.2
33,765	-		GFF6899	0.33	-2.0
33,765	-		GFF6899	0.33	-1.1
33,765	-		GFF6899	0.33	-1.5
33,765	-		GFF6899	0.33	-0.8
33,863	+		GFF6899	0.37	-1.1
33,864	-		GFF6899	0.37	-0.8
33,864	-		GFF6899	0.37	+0.6
33,864	-		GFF6899	0.37	+0.3
33,864	-		GFF6899	0.37	-0.5
33,864	-		GFF6899	0.37	+1.0
33,864	-		GFF6899	0.37	-0.8
33,984	-		GFF6899	0.43	+0.6
33,984	-		GFF6899	0.43	+0.1
34,004	+		GFF6899	0.44	-0.1
34,005	-		GFF6899	0.44	-0.9
34,079	+		GFF6899	0.48	+0.6
34,079	+		GFF6899	0.48	-2.5
34,079	+		GFF6899	0.48	+0.3
34,079	+		GFF6899	0.48	-2.2
34,079	+		GFF6899	0.48	-0.0
34,079	+		GFF6899	0.48	-2.4
34,079	+		GFF6899	0.48	-1.6
34,079	+		GFF6899	0.48	+0.5
34,080	-		GFF6899	0.48	-1.8
34,080	-		GFF6899	0.48	+1.6
34,080	-		GFF6899	0.48	-2.3
34,080	-		GFF6899	0.48	+0.8
34,080	-		GFF6899	0.48	+2.7
34,080	-		GFF6899	0.48	+0.3
34,085	+		GFF6899	0.48	-0.8
34,085	+		GFF6899	0.48	-2.4
34,085	+		GFF6899	0.48	+0.1
34,085	+		GFF6899	0.48	+1.0
34,085	+		GFF6899	0.48	-0.3
34,086	-		GFF6899	0.48	-0.0
34,086	-		GFF6899	0.48	+0.0
34,086	-		GFF6899	0.48	+1.3
34,086	-		GFF6899	0.48	+0.2
34,086	-		GFF6899	0.48	-0.7