Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF682 and GFF683 overlap by 12 nucleotides GFF683 and GFF684 are separated by 45 nucleotides GFF684 and GFF685 overlap by 14 nucleotides GFF685 and GFF686 are separated by 14 nucleotides
GFF682 - 2-hydroxychromene-2-carboxylate isomerase family protein, at 736,534 to 737,139
GFF682
GFF683 - Transcriptional regulator, LysR family, at 737,128 to 738,048
GFF683
GFF684 - FIG00553873: hypothetical protein, at 738,094 to 739,074
GFF684
GFF685 - Tricarboxylate transport protein TctC, at 739,061 to 740,023
GFF685
GFF686 - porin, Gram-negative type, at 740,038 to 741,165
GFF686
Position (kb) 738
739
740 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 737.222 kb on + strand, within GFF683 at 737.222 kb on + strand, within GFF683 at 737.223 kb on - strand, within GFF683 at 737.223 kb on - strand, within GFF683 at 737.223 kb on - strand, within GFF683 at 737.223 kb on - strand, within GFF683 at 737.223 kb on - strand, within GFF683 at 737.360 kb on + strand, within GFF683 at 737.361 kb on - strand, within GFF683 at 737.594 kb on + strand, within GFF683 at 737.595 kb on - strand, within GFF683 at 737.595 kb on - strand, within GFF683 at 738.349 kb on + strand, within GFF684 at 738.349 kb on + strand, within GFF684 at 738.349 kb on + strand, within GFF684 at 738.349 kb on + strand, within GFF684 at 738.349 kb on + strand, within GFF684 at 738.349 kb on + strand, within GFF684 at 738.350 kb on - strand, within GFF684 at 738.421 kb on + strand, within GFF684 at 738.422 kb on - strand, within GFF684 at 738.422 kb on - strand, within GFF684 at 738.422 kb on - strand, within GFF684 at 738.422 kb on - strand, within GFF684 at 738.658 kb on + strand, within GFF684 at 738.658 kb on + strand, within GFF684 at 738.659 kb on - strand, within GFF684 at 738.659 kb on - strand, within GFF684 at 738.659 kb on - strand, within GFF684 at 738.659 kb on - strand, within GFF684 at 738.659 kb on - strand, within GFF684 at 738.676 kb on + strand, within GFF684 at 738.676 kb on + strand, within GFF684 at 738.676 kb on + strand, within GFF684 at 738.676 kb on + strand, within GFF684 at 738.676 kb on + strand, within GFF684 at 738.677 kb on - strand, within GFF684 at 738.691 kb on + strand, within GFF684 at 738.691 kb on + strand, within GFF684 at 738.691 kb on + strand, within GFF684 at 738.748 kb on + strand, within GFF684 at 738.748 kb on + strand, within GFF684 at 738.748 kb on + strand, within GFF684 at 738.748 kb on + strand, within GFF684 at 738.748 kb on + strand, within GFF684 at 738.749 kb on - strand, within GFF684 at 738.749 kb on - strand, within GFF684 at 739.062 kb on + strand at 739.063 kb on - strand at 739.068 kb on - strand at 739.110 kb on + strand at 739.110 kb on + strand at 739.111 kb on - strand at 739.156 kb on - strand at 739.482 kb on + strand, within GFF685 at 739.482 kb on + strand, within GFF685 at 739.482 kb on + strand, within GFF685 at 739.483 kb on - strand, within GFF685 at 739.483 kb on - strand, within GFF685 at 739.762 kb on - strand, within GFF685
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 737,222 + GFF683 0.10 -1.6 737,222 + GFF683 0.10 +0.1 737,223 - GFF683 0.10 -0.0 737,223 - GFF683 0.10 +0.6 737,223 - GFF683 0.10 -1.0 737,223 - GFF683 0.10 -0.7 737,223 - GFF683 0.10 -2.2 737,360 + GFF683 0.25 +1.4 737,361 - GFF683 0.25 +1.4 737,594 + GFF683 0.51 -2.0 737,595 - GFF683 0.51 -0.8 737,595 - GFF683 0.51 -2.6 738,349 + GFF684 0.26 -2.2 738,349 + GFF684 0.26 -2.2 738,349 + GFF684 0.26 +0.6 738,349 + GFF684 0.26 -2.6 738,349 + GFF684 0.26 -0.5 738,349 + GFF684 0.26 -0.8 738,350 - GFF684 0.26 -1.4 738,421 + GFF684 0.33 +2.4 738,422 - GFF684 0.33 -0.3 738,422 - GFF684 0.33 -1.7 738,422 - GFF684 0.33 +0.2 738,422 - GFF684 0.33 +0.8 738,658 + GFF684 0.57 +1.4 738,658 + GFF684 0.57 +1.2 738,659 - GFF684 0.58 -1.2 738,659 - GFF684 0.58 +2.4 738,659 - GFF684 0.58 -0.6 738,659 - GFF684 0.58 -0.7 738,659 - GFF684 0.58 -0.7 738,676 + GFF684 0.59 -2.5 738,676 + GFF684 0.59 +3.4 738,676 + GFF684 0.59 -1.1 738,676 + GFF684 0.59 +0.8 738,676 + GFF684 0.59 +0.9 738,677 - GFF684 0.59 -1.3 738,691 + GFF684 0.61 +0.9 738,691 + GFF684 0.61 -0.6 738,691 + GFF684 0.61 -1.2 738,748 + GFF684 0.67 -0.8 738,748 + GFF684 0.67 -0.3 738,748 + GFF684 0.67 +1.2 738,748 + GFF684 0.67 +0.8 738,748 + GFF684 0.67 +0.2 738,749 - GFF684 0.67 +1.5 738,749 - GFF684 0.67 -1.9 739,062 + +0.6 739,063 - -2.4 739,068 - -0.2 739,110 + -0.6 739,110 + -3.5 739,111 - +0.2 739,156 - -0.6 739,482 + GFF685 0.44 -1.0 739,482 + GFF685 0.44 -1.0 739,482 + GFF685 0.44 -1.6 739,483 - GFF685 0.44 +0.8 739,483 - GFF685 0.44 -2.0 739,762 - GFF685 0.73 -3.4
Or see this region's nucleotide sequence