Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6834 and GFF6835 are separated by 67 nucleotides GFF6835 and GFF6836 are separated by 74 nucleotides GFF6836 and GFF6837 are separated by 232 nucleotides
GFF6834 - no description, at 19,396 to 19,851
GFF6834
GFF6835 - DNA-3-methyladenine glycosylase (EC 3.2.2.20), at 19,919 to 20,503
GFF6835
GFF6836 - hypothetical protein, at 20,578 to 20,931
GFF6836
GFF6837 - BUG/TctC family periplasmic protein, at 21,164 to 22,132
GFF6837
Position (kb) 20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 19.603 kb on + strand, within GFF6834 at 19.603 kb on + strand, within GFF6834 at 19.604 kb on - strand, within GFF6834 at 19.604 kb on - strand, within GFF6834 at 19.604 kb on - strand, within GFF6834 at 19.888 kb on + strand at 19.889 kb on - strand at 19.898 kb on + strand at 19.898 kb on + strand at 19.899 kb on - strand at 19.899 kb on - strand at 19.899 kb on - strand at 19.899 kb on - strand at 19.899 kb on - strand at 19.899 kb on - strand at 19.899 kb on - strand at 19.899 kb on - strand at 19.982 kb on + strand, within GFF6835 at 19.982 kb on + strand, within GFF6835 at 19.983 kb on - strand, within GFF6835 at 19.983 kb on - strand, within GFF6835 at 20.012 kb on + strand, within GFF6835 at 20.013 kb on - strand, within GFF6835 at 20.013 kb on - strand, within GFF6835 at 20.240 kb on + strand, within GFF6835 at 20.240 kb on + strand, within GFF6835 at 20.240 kb on + strand, within GFF6835 at 20.240 kb on + strand, within GFF6835 at 20.240 kb on + strand, within GFF6835 at 20.241 kb on - strand, within GFF6835 at 20.241 kb on - strand, within GFF6835 at 20.414 kb on + strand, within GFF6835 at 20.414 kb on + strand, within GFF6835 at 20.414 kb on + strand, within GFF6835 at 20.414 kb on + strand, within GFF6835 at 20.414 kb on + strand, within GFF6835 at 20.414 kb on + strand, within GFF6835 at 20.414 kb on + strand, within GFF6835 at 20.414 kb on + strand, within GFF6835 at 20.414 kb on + strand, within GFF6835 at 20.414 kb on + strand, within GFF6835 at 20.414 kb on + strand, within GFF6835 at 20.414 kb on + strand, within GFF6835 at 20.414 kb on + strand, within GFF6835 at 20.414 kb on + strand, within GFF6835 at 20.415 kb on - strand, within GFF6835 at 20.415 kb on - strand, within GFF6835 at 20.415 kb on - strand, within GFF6835 at 20.415 kb on - strand, within GFF6835 at 20.415 kb on - strand, within GFF6835 at 20.415 kb on - strand, within GFF6835 at 20.415 kb on - strand, within GFF6835 at 20.415 kb on - strand, within GFF6835 at 20.415 kb on - strand, within GFF6835 at 20.415 kb on - strand, within GFF6835 at 20.415 kb on - strand, within GFF6835 at 20.415 kb on - strand, within GFF6835 at 20.415 kb on - strand, within GFF6835 at 20.415 kb on - strand, within GFF6835 at 20.415 kb on - strand, within GFF6835 at 20.415 kb on - strand, within GFF6835 at 20.541 kb on - strand at 20.579 kb on + strand at 20.580 kb on - strand at 20.771 kb on + strand, within GFF6836 at 20.771 kb on + strand, within GFF6836 at 20.771 kb on + strand, within GFF6836 at 20.772 kb on - strand, within GFF6836 at 20.772 kb on - strand, within GFF6836 at 20.772 kb on - strand, within GFF6836 at 20.772 kb on - strand, within GFF6836 at 20.772 kb on - strand, within GFF6836 at 20.772 kb on - strand, within GFF6836 at 20.829 kb on - strand, within GFF6836 at 20.858 kb on + strand, within GFF6836 at 20.858 kb on + strand, within GFF6836 at 20.858 kb on + strand, within GFF6836 at 20.858 kb on + strand, within GFF6836 at 20.858 kb on + strand, within GFF6836 at 20.858 kb on + strand, within GFF6836 at 20.858 kb on + strand, within GFF6836 at 20.858 kb on + strand, within GFF6836 at 20.858 kb on + strand, within GFF6836 at 20.858 kb on + strand, within GFF6836 at 20.858 kb on + strand, within GFF6836 at 20.858 kb on + strand, within GFF6836 at 20.858 kb on + strand, within GFF6836 at 20.859 kb on - strand, within GFF6836 at 20.859 kb on - strand, within GFF6836 at 20.859 kb on - strand, within GFF6836 at 20.859 kb on - strand, within GFF6836 at 20.859 kb on - strand, within GFF6836 at 20.859 kb on - strand, within GFF6836 at 20.859 kb on - strand, within GFF6836 at 20.859 kb on - strand, within GFF6836 at 20.859 kb on - strand, within GFF6836 at 20.859 kb on - strand, within GFF6836 at 20.859 kb on - strand, within GFF6836 at 20.859 kb on - strand, within GFF6836 at 20.986 kb on + strand at 20.998 kb on + strand at 20.999 kb on - strand at 21.105 kb on + strand at 21.106 kb on - strand at 21.116 kb on + strand at 21.116 kb on + strand at 21.116 kb on + strand at 21.116 kb on + strand at 21.117 kb on - strand at 21.117 kb on - strand at 21.117 kb on - strand at 21.131 kb on + strand at 21.131 kb on + strand at 21.132 kb on - strand at 21.142 kb on + strand at 21.142 kb on + strand at 21.142 kb on + strand at 21.142 kb on + strand at 21.143 kb on - strand at 21.143 kb on - strand at 21.143 kb on - strand at 21.166 kb on - strand at 21.166 kb on - strand at 21.441 kb on + strand, within GFF6837 at 21.442 kb on - strand, within GFF6837 at 21.501 kb on + strand, within GFF6837 at 21.501 kb on + strand, within GFF6837 at 21.501 kb on + strand, within GFF6837 at 21.501 kb on + strand, within GFF6837 at 21.501 kb on + strand, within GFF6837 at 21.501 kb on + strand, within GFF6837 at 21.501 kb on + strand, within GFF6837 at 21.502 kb on - strand, within GFF6837 at 21.502 kb on - strand, within GFF6837 at 21.502 kb on - strand, within GFF6837 at 21.585 kb on + strand, within GFF6837 at 21.585 kb on + strand, within GFF6837 at 21.585 kb on + strand, within GFF6837 at 21.585 kb on + strand, within GFF6837 at 21.586 kb on - strand, within GFF6837 at 21.586 kb on - strand, within GFF6837 at 21.586 kb on - strand, within GFF6837 at 21.612 kb on + strand, within GFF6837 at 21.612 kb on + strand, within GFF6837 at 21.613 kb on - strand, within GFF6837 at 21.613 kb on - strand, within GFF6837 at 21.613 kb on - strand, within GFF6837 at 21.729 kb on + strand, within GFF6837 at 21.729 kb on + strand, within GFF6837 at 21.729 kb on + strand, within GFF6837 at 21.729 kb on + strand, within GFF6837 at 21.729 kb on + strand, within GFF6837 at 21.730 kb on - strand, within GFF6837 at 21.730 kb on - strand, within GFF6837 at 21.730 kb on - strand, within GFF6837 at 21.730 kb on - strand, within GFF6837 at 21.807 kb on + strand, within GFF6837 at 21.807 kb on + strand, within GFF6837 at 21.807 kb on + strand, within GFF6837 at 21.807 kb on + strand, within GFF6837 at 21.807 kb on + strand, within GFF6837 at 21.807 kb on + strand, within GFF6837 at 21.807 kb on + strand, within GFF6837 at 21.807 kb on + strand, within GFF6837 at 21.808 kb on - strand, within GFF6837 at 21.808 kb on - strand, within GFF6837 at 21.808 kb on - strand, within GFF6837 at 21.808 kb on - strand, within GFF6837 at 21.808 kb on - strand, within GFF6837 at 21.808 kb on - strand, within GFF6837 at 21.808 kb on - strand, within GFF6837 at 21.808 kb on - strand, within GFF6837 at 21.870 kb on + strand, within GFF6837 at 21.871 kb on - strand, within GFF6837 at 21.871 kb on - strand, within GFF6837
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 19,603 + GFF6834 0.45 +0.1 19,603 + GFF6834 0.45 -1.6 19,604 - GFF6834 0.46 +0.5 19,604 - GFF6834 0.46 -0.1 19,604 - GFF6834 0.46 +0.5 19,888 + -1.9 19,889 - -1.3 19,898 + +0.9 19,898 + -0.7 19,899 - -0.8 19,899 - -0.4 19,899 - -0.9 19,899 - +0.9 19,899 - -0.2 19,899 - -2.2 19,899 - -1.4 19,899 - +0.7 19,982 + GFF6835 0.11 +0.3 19,982 + GFF6835 0.11 -1.1 19,983 - GFF6835 0.11 -1.7 19,983 - GFF6835 0.11 +0.2 20,012 + GFF6835 0.16 +0.3 20,013 - GFF6835 0.16 +0.9 20,013 - GFF6835 0.16 -0.0 20,240 + GFF6835 0.55 -2.4 20,240 + GFF6835 0.55 +1.0 20,240 + GFF6835 0.55 +1.6 20,240 + GFF6835 0.55 -2.2 20,240 + GFF6835 0.55 -0.1 20,241 - GFF6835 0.55 -2.4 20,241 - GFF6835 0.55 -0.6 20,414 + GFF6835 0.85 -1.0 20,414 + GFF6835 0.85 -0.9 20,414 + GFF6835 0.85 -1.8 20,414 + GFF6835 0.85 -0.2 20,414 + GFF6835 0.85 +1.3 20,414 + GFF6835 0.85 -1.1 20,414 + GFF6835 0.85 -0.0 20,414 + GFF6835 0.85 +0.3 20,414 + GFF6835 0.85 +0.6 20,414 + GFF6835 0.85 +0.5 20,414 + GFF6835 0.85 +1.1 20,414 + GFF6835 0.85 +3.9 20,414 + GFF6835 0.85 -0.1 20,414 + GFF6835 0.85 -2.8 20,415 - GFF6835 0.85 -1.3 20,415 - GFF6835 0.85 -0.9 20,415 - GFF6835 0.85 +0.1 20,415 - GFF6835 0.85 -2.3 20,415 - GFF6835 0.85 -1.8 20,415 - GFF6835 0.85 -0.4 20,415 - GFF6835 0.85 +1.7 20,415 - GFF6835 0.85 +1.2 20,415 - GFF6835 0.85 -0.0 20,415 - GFF6835 0.85 +0.1 20,415 - GFF6835 0.85 -2.6 20,415 - GFF6835 0.85 +0.4 20,415 - GFF6835 0.85 +0.9 20,415 - GFF6835 0.85 +1.2 20,415 - GFF6835 0.85 -2.1 20,415 - GFF6835 0.85 -3.3 20,541 - +0.4 20,579 + -1.1 20,580 - -0.4 20,771 + GFF6836 0.55 +0.4 20,771 + GFF6836 0.55 +1.9 20,771 + GFF6836 0.55 -0.9 20,772 - GFF6836 0.55 -2.3 20,772 - GFF6836 0.55 -0.4 20,772 - GFF6836 0.55 +0.2 20,772 - GFF6836 0.55 -1.3 20,772 - GFF6836 0.55 +1.1 20,772 - GFF6836 0.55 +0.8 20,829 - GFF6836 0.71 -0.4 20,858 + GFF6836 0.79 -1.3 20,858 + GFF6836 0.79 -1.8 20,858 + GFF6836 0.79 -1.6 20,858 + GFF6836 0.79 -1.6 20,858 + GFF6836 0.79 -2.6 20,858 + GFF6836 0.79 -0.3 20,858 + GFF6836 0.79 -1.4 20,858 + GFF6836 0.79 +0.2 20,858 + GFF6836 0.79 -0.4 20,858 + GFF6836 0.79 +1.4 20,858 + GFF6836 0.79 -1.4 20,858 + GFF6836 0.79 -1.2 20,858 + GFF6836 0.79 -0.4 20,859 - GFF6836 0.79 -1.1 20,859 - GFF6836 0.79 +0.9 20,859 - GFF6836 0.79 +1.3 20,859 - GFF6836 0.79 -0.9 20,859 - GFF6836 0.79 -2.1 20,859 - GFF6836 0.79 +0.1 20,859 - GFF6836 0.79 -1.3 20,859 - GFF6836 0.79 -1.1 20,859 - GFF6836 0.79 -2.3 20,859 - GFF6836 0.79 -1.1 20,859 - GFF6836 0.79 -0.3 20,859 - GFF6836 0.79 -0.9 20,986 + -3.3 20,998 + -0.7 20,999 - +1.4 21,105 + +0.1 21,106 - +1.4 21,116 + +0.3 21,116 + -0.9 21,116 + +1.5 21,116 + -1.8 21,117 - -0.1 21,117 - -0.1 21,117 - -0.9 21,131 + -1.9 21,131 + -0.5 21,132 - -0.9 21,142 + +0.0 21,142 + -3.4 21,142 + -1.1 21,142 + +0.2 21,143 - +2.0 21,143 - -0.2 21,143 - -1.9 21,166 - -0.1 21,166 - -1.2 21,441 + GFF6837 0.29 -0.8 21,442 - GFF6837 0.29 +1.3 21,501 + GFF6837 0.35 -2.0 21,501 + GFF6837 0.35 -1.4 21,501 + GFF6837 0.35 -2.8 21,501 + GFF6837 0.35 -0.4 21,501 + GFF6837 0.35 -0.1 21,501 + GFF6837 0.35 -0.5 21,501 + GFF6837 0.35 -2.7 21,502 - GFF6837 0.35 +0.5 21,502 - GFF6837 0.35 -0.6 21,502 - GFF6837 0.35 -0.9 21,585 + GFF6837 0.43 -0.9 21,585 + GFF6837 0.43 +0.9 21,585 + GFF6837 0.43 -1.4 21,585 + GFF6837 0.43 +0.6 21,586 - GFF6837 0.44 -2.3 21,586 - GFF6837 0.44 -1.2 21,586 - GFF6837 0.44 -1.1 21,612 + GFF6837 0.46 -2.7 21,612 + GFF6837 0.46 -1.4 21,613 - GFF6837 0.46 -0.1 21,613 - GFF6837 0.46 +0.9 21,613 - GFF6837 0.46 +3.1 21,729 + GFF6837 0.58 -0.1 21,729 + GFF6837 0.58 +1.8 21,729 + GFF6837 0.58 -0.2 21,729 + GFF6837 0.58 +0.8 21,729 + GFF6837 0.58 -0.7 21,730 - GFF6837 0.58 -3.5 21,730 - GFF6837 0.58 -0.2 21,730 - GFF6837 0.58 +0.3 21,730 - GFF6837 0.58 +2.9 21,807 + GFF6837 0.66 -1.7 21,807 + GFF6837 0.66 +0.2 21,807 + GFF6837 0.66 -0.2 21,807 + GFF6837 0.66 +1.2 21,807 + GFF6837 0.66 -1.8 21,807 + GFF6837 0.66 -0.7 21,807 + GFF6837 0.66 +1.2 21,807 + GFF6837 0.66 +0.2 21,808 - GFF6837 0.66 -0.1 21,808 - GFF6837 0.66 +0.3 21,808 - GFF6837 0.66 -0.5 21,808 - GFF6837 0.66 +1.2 21,808 - GFF6837 0.66 -0.7 21,808 - GFF6837 0.66 +0.3 21,808 - GFF6837 0.66 -1.6 21,808 - GFF6837 0.66 -2.4 21,870 + GFF6837 0.73 +0.6 21,871 - GFF6837 0.73 -0.4 21,871 - GFF6837 0.73 +1.7
Or see this region's nucleotide sequence