Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF681 and GFF682 overlap by 4 nucleotides GFF682 and GFF683 overlap by 12 nucleotides GFF683 and GFF684 are separated by 45 nucleotides
GFF681 - Hypothetical protein in cluster with At3g50560-like gene family, at 735,698 to 736,537
GFF681
GFF682 - 2-hydroxychromene-2-carboxylate isomerase family protein, at 736,534 to 737,139
GFF682
GFF683 - Transcriptional regulator, LysR family, at 737,128 to 738,048
GFF683
GFF684 - FIG00553873: hypothetical protein, at 738,094 to 739,074
GFF684
Position (kb) 736
737
738 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 735.537 kb on - strand at 735.537 kb on - strand at 735.537 kb on - strand at 735.542 kb on + strand at 735.550 kb on + strand at 735.555 kb on + strand at 735.555 kb on + strand at 735.555 kb on + strand at 735.555 kb on + strand at 735.555 kb on + strand at 735.555 kb on + strand at 735.556 kb on - strand at 735.608 kb on + strand at 735.681 kb on + strand at 735.681 kb on + strand at 735.681 kb on + strand at 735.682 kb on - strand at 735.737 kb on + strand at 735.737 kb on + strand at 735.737 kb on + strand at 735.737 kb on + strand at 735.738 kb on - strand at 735.738 kb on - strand at 735.738 kb on - strand at 735.738 kb on - strand at 735.770 kb on + strand at 735.770 kb on + strand at 735.770 kb on + strand at 735.771 kb on - strand at 735.771 kb on - strand at 735.815 kb on + strand, within GFF681 at 735.815 kb on + strand, within GFF681 at 735.815 kb on + strand, within GFF681 at 735.815 kb on + strand, within GFF681 at 735.815 kb on + strand, within GFF681 at 735.815 kb on + strand, within GFF681 at 735.816 kb on - strand, within GFF681 at 735.816 kb on - strand, within GFF681 at 735.816 kb on - strand, within GFF681 at 735.816 kb on - strand, within GFF681 at 735.953 kb on + strand, within GFF681 at 735.953 kb on + strand, within GFF681 at 735.954 kb on - strand, within GFF681 at 736.118 kb on + strand, within GFF681 at 736.118 kb on + strand, within GFF681 at 736.119 kb on - strand, within GFF681 at 736.119 kb on - strand, within GFF681 at 736.119 kb on - strand, within GFF681 at 736.119 kb on - strand, within GFF681 at 736.193 kb on + strand, within GFF681 at 736.193 kb on + strand, within GFF681 at 736.193 kb on + strand, within GFF681 at 736.194 kb on - strand, within GFF681 at 736.194 kb on - strand, within GFF681 at 736.331 kb on + strand, within GFF681 at 736.331 kb on + strand, within GFF681 at 736.331 kb on + strand, within GFF681 at 736.332 kb on - strand, within GFF681 at 736.332 kb on - strand, within GFF681 at 736.332 kb on - strand, within GFF681 at 736.367 kb on + strand, within GFF681 at 736.367 kb on + strand, within GFF681 at 736.367 kb on + strand, within GFF681 at 736.367 kb on + strand, within GFF681 at 736.412 kb on + strand, within GFF681 at 736.413 kb on - strand, within GFF681 at 736.413 kb on - strand, within GFF681 at 736.443 kb on - strand, within GFF681 at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.574 kb on - strand at 736.574 kb on - strand at 736.574 kb on - strand at 736.574 kb on - strand at 736.574 kb on - strand at 736.574 kb on - strand at 736.574 kb on - strand at 736.574 kb on - strand at 736.574 kb on - strand at 736.574 kb on - strand at 736.574 kb on - strand at 736.574 kb on - strand at 736.574 kb on - strand at 736.579 kb on + strand at 736.579 kb on + strand at 736.579 kb on + strand at 736.579 kb on + strand at 736.579 kb on + strand at 736.580 kb on - strand at 736.580 kb on - strand at 736.580 kb on - strand at 736.580 kb on - strand at 736.580 kb on - strand at 736.580 kb on - strand at 736.720 kb on + strand, within GFF682 at 736.720 kb on + strand, within GFF682 at 736.720 kb on + strand, within GFF682 at 736.720 kb on + strand, within GFF682 at 736.721 kb on - strand, within GFF682 at 736.721 kb on - strand, within GFF682 at 736.721 kb on - strand, within GFF682 at 736.721 kb on - strand, within GFF682 at 736.721 kb on - strand, within GFF682 at 736.721 kb on - strand, within GFF682 at 736.756 kb on + strand, within GFF682 at 736.757 kb on - strand, within GFF682 at 736.757 kb on - strand, within GFF682 at 737.222 kb on + strand, within GFF683 at 737.222 kb on + strand, within GFF683 at 737.223 kb on - strand, within GFF683 at 737.223 kb on - strand, within GFF683 at 737.223 kb on - strand, within GFF683 at 737.223 kb on - strand, within GFF683 at 737.223 kb on - strand, within GFF683 at 737.360 kb on + strand, within GFF683 at 737.361 kb on - strand, within GFF683 at 737.594 kb on + strand, within GFF683 at 737.595 kb on - strand, within GFF683 at 737.595 kb on - strand, within GFF683
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 735,537 - +0.6 735,537 - -2.4 735,537 - -3.1 735,542 + +1.9 735,550 + +0.2 735,555 + +0.0 735,555 + -0.9 735,555 + -2.4 735,555 + -0.8 735,555 + -1.2 735,555 + +0.2 735,556 - -0.3 735,608 + -0.2 735,681 + -2.1 735,681 + +1.8 735,681 + -2.1 735,682 - -0.5 735,737 + +0.5 735,737 + -0.4 735,737 + -1.2 735,737 + +0.8 735,738 - +1.7 735,738 - +2.0 735,738 - +0.8 735,738 - -1.6 735,770 + -1.2 735,770 + -0.7 735,770 + -2.6 735,771 - +2.6 735,771 - -2.3 735,815 + GFF681 0.14 -1.7 735,815 + GFF681 0.14 -1.8 735,815 + GFF681 0.14 -1.7 735,815 + GFF681 0.14 -0.9 735,815 + GFF681 0.14 -1.2 735,815 + GFF681 0.14 +0.8 735,816 - GFF681 0.14 -1.9 735,816 - GFF681 0.14 -1.2 735,816 - GFF681 0.14 -0.2 735,816 - GFF681 0.14 -0.6 735,953 + GFF681 0.30 -1.2 735,953 + GFF681 0.30 +2.2 735,954 - GFF681 0.30 -3.0 736,118 + GFF681 0.50 -1.7 736,118 + GFF681 0.50 -0.9 736,119 - GFF681 0.50 -3.3 736,119 - GFF681 0.50 -2.1 736,119 - GFF681 0.50 +1.0 736,119 - GFF681 0.50 -0.6 736,193 + GFF681 0.59 -2.8 736,193 + GFF681 0.59 -1.0 736,193 + GFF681 0.59 -1.6 736,194 - GFF681 0.59 -1.6 736,194 - GFF681 0.59 +0.0 736,331 + GFF681 0.75 +0.5 736,331 + GFF681 0.75 -2.3 736,331 + GFF681 0.75 -0.2 736,332 - GFF681 0.75 +0.6 736,332 - GFF681 0.75 +0.9 736,332 - GFF681 0.75 -1.9 736,367 + GFF681 0.80 -0.5 736,367 + GFF681 0.80 -0.6 736,367 + GFF681 0.80 +3.8 736,367 + GFF681 0.80 +1.3 736,412 + GFF681 0.85 -0.6 736,413 - GFF681 0.85 +1.0 736,413 - GFF681 0.85 +4.2 736,443 - GFF681 0.89 +1.6 736,573 + +0.2 736,573 + -1.4 736,573 + +0.1 736,573 + +2.8 736,573 + +1.8 736,573 + -2.5 736,573 + -0.7 736,573 + -0.3 736,573 + -2.9 736,573 + -1.8 736,573 + -2.0 736,573 + -1.2 736,573 + +0.8 736,573 + +0.3 736,573 + -1.0 736,574 - -0.2 736,574 - +1.0 736,574 - +1.0 736,574 - +2.1 736,574 - +2.4 736,574 - +0.1 736,574 - +0.3 736,574 - -0.2 736,574 - -1.7 736,574 - -1.6 736,574 - -2.6 736,574 - -0.2 736,574 - -0.0 736,579 + -0.2 736,579 + +0.2 736,579 + +1.2 736,579 + -0.6 736,579 + +0.1 736,580 - -0.7 736,580 - +1.0 736,580 - +0.2 736,580 - +1.0 736,580 - -1.6 736,580 - -1.7 736,720 + GFF682 0.31 +0.7 736,720 + GFF682 0.31 -0.6 736,720 + GFF682 0.31 +0.4 736,720 + GFF682 0.31 -2.1 736,721 - GFF682 0.31 +0.2 736,721 - GFF682 0.31 -3.7 736,721 - GFF682 0.31 +0.6 736,721 - GFF682 0.31 +0.7 736,721 - GFF682 0.31 -3.1 736,721 - GFF682 0.31 -1.6 736,756 + GFF682 0.37 -0.1 736,757 - GFF682 0.37 -0.7 736,757 - GFF682 0.37 -1.2 737,222 + GFF683 0.10 -1.6 737,222 + GFF683 0.10 +0.1 737,223 - GFF683 0.10 -0.0 737,223 - GFF683 0.10 +0.6 737,223 - GFF683 0.10 -1.0 737,223 - GFF683 0.10 -0.7 737,223 - GFF683 0.10 -2.2 737,360 + GFF683 0.25 +1.4 737,361 - GFF683 0.25 +1.4 737,594 + GFF683 0.51 -2.0 737,595 - GFF683 0.51 -0.8 737,595 - GFF683 0.51 -2.6
Or see this region's nucleotide sequence