Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6815 and GFF6816 are separated by 2 nucleotides
GFF6815 - FIG00453801: hypothetical protein, at 61,487 to 62,746
GFF6815
GFF6816 - SAM-dependent methyltransferase, at 62,749 to 63,753
GFF6816
Position (kb) 62
63
64 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 61.820 kb on + strand, within GFF6815 at 61.894 kb on + strand, within GFF6815 at 61.894 kb on + strand, within GFF6815 at 61.991 kb on + strand, within GFF6815 at 61.991 kb on + strand, within GFF6815 at 61.992 kb on - strand, within GFF6815 at 61.992 kb on - strand, within GFF6815 at 61.992 kb on - strand, within GFF6815 at 62.282 kb on + strand, within GFF6815 at 62.282 kb on + strand, within GFF6815 at 62.420 kb on + strand, within GFF6815 at 62.420 kb on + strand, within GFF6815 at 62.420 kb on + strand, within GFF6815 at 62.420 kb on + strand, within GFF6815 at 62.421 kb on - strand, within GFF6815 at 62.421 kb on - strand, within GFF6815 at 62.421 kb on - strand, within GFF6815 at 62.421 kb on - strand, within GFF6815 at 62.435 kb on + strand, within GFF6815 at 62.549 kb on + strand, within GFF6815 at 62.597 kb on + strand, within GFF6815 at 62.597 kb on + strand, within GFF6815 at 62.597 kb on + strand, within GFF6815 at 62.598 kb on - strand, within GFF6815 at 62.679 kb on - strand at 62.959 kb on + strand, within GFF6816 at 62.959 kb on + strand, within GFF6816 at 62.959 kb on + strand, within GFF6816 at 62.959 kb on + strand, within GFF6816 at 62.962 kb on + strand, within GFF6816 at 62.963 kb on - strand, within GFF6816 at 62.963 kb on - strand, within GFF6816 at 62.963 kb on - strand, within GFF6816 at 62.963 kb on - strand, within GFF6816 at 63.211 kb on + strand, within GFF6816 at 63.212 kb on - strand, within GFF6816 at 63.212 kb on - strand, within GFF6816 at 63.241 kb on - strand, within GFF6816 at 63.241 kb on - strand, within GFF6816 at 63.241 kb on - strand, within GFF6816 at 63.241 kb on - strand, within GFF6816 at 63.409 kb on + strand, within GFF6816 at 63.409 kb on + strand, within GFF6816 at 63.410 kb on - strand, within GFF6816 at 63.410 kb on - strand, within GFF6816 at 63.410 kb on - strand, within GFF6816 at 63.622 kb on - strand, within GFF6816 at 63.622 kb on - strand, within GFF6816 at 63.622 kb on - strand, within GFF6816 at 63.627 kb on + strand, within GFF6816 at 63.627 kb on + strand, within GFF6816 at 63.628 kb on - strand, within GFF6816 at 63.634 kb on + strand, within GFF6816 at 63.635 kb on - strand, within GFF6816 at 63.642 kb on + strand, within GFF6816 at 63.642 kb on + strand, within GFF6816 at 63.642 kb on + strand, within GFF6816 at 63.643 kb on - strand, within GFF6816 at 63.643 kb on - strand, within GFF6816 at 63.643 kb on - strand, within GFF6816 at 63.751 kb on + strand at 63.751 kb on + strand at 63.751 kb on + strand at 63.751 kb on + strand at 63.751 kb on + strand at 63.752 kb on - strand at 63.752 kb on - strand at 63.752 kb on - strand at 63.752 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 61,820 + GFF6815 0.26 +1.7 61,894 + GFF6815 0.32 -2.1 61,894 + GFF6815 0.32 +0.4 61,991 + GFF6815 0.40 -2.4 61,991 + GFF6815 0.40 -2.4 61,992 - GFF6815 0.40 +0.9 61,992 - GFF6815 0.40 +0.4 61,992 - GFF6815 0.40 -0.9 62,282 + GFF6815 0.63 -0.7 62,282 + GFF6815 0.63 -1.1 62,420 + GFF6815 0.74 +0.8 62,420 + GFF6815 0.74 +0.5 62,420 + GFF6815 0.74 +0.3 62,420 + GFF6815 0.74 +0.5 62,421 - GFF6815 0.74 +1.7 62,421 - GFF6815 0.74 -0.2 62,421 - GFF6815 0.74 -0.8 62,421 - GFF6815 0.74 -0.8 62,435 + GFF6815 0.75 +3.4 62,549 + GFF6815 0.84 -0.1 62,597 + GFF6815 0.88 -1.1 62,597 + GFF6815 0.88 -1.1 62,597 + GFF6815 0.88 -0.3 62,598 - GFF6815 0.88 +1.6 62,679 - -2.1 62,959 + GFF6816 0.21 -2.0 62,959 + GFF6816 0.21 -1.3 62,959 + GFF6816 0.21 -1.5 62,959 + GFF6816 0.21 +1.1 62,962 + GFF6816 0.21 -1.5 62,963 - GFF6816 0.21 -1.6 62,963 - GFF6816 0.21 +0.6 62,963 - GFF6816 0.21 -2.3 62,963 - GFF6816 0.21 +0.1 63,211 + GFF6816 0.46 -2.4 63,212 - GFF6816 0.46 -0.1 63,212 - GFF6816 0.46 -0.7 63,241 - GFF6816 0.49 +1.2 63,241 - GFF6816 0.49 -0.9 63,241 - GFF6816 0.49 +0.0 63,241 - GFF6816 0.49 +0.5 63,409 + GFF6816 0.66 -2.9 63,409 + GFF6816 0.66 -1.6 63,410 - GFF6816 0.66 +0.4 63,410 - GFF6816 0.66 +0.1 63,410 - GFF6816 0.66 -0.7 63,622 - GFF6816 0.87 -1.1 63,622 - GFF6816 0.87 +0.4 63,622 - GFF6816 0.87 +2.7 63,627 + GFF6816 0.87 -0.9 63,627 + GFF6816 0.87 -3.5 63,628 - GFF6816 0.87 +0.4 63,634 + GFF6816 0.88 +0.0 63,635 - GFF6816 0.88 +0.0 63,642 + GFF6816 0.89 +0.8 63,642 + GFF6816 0.89 +0.4 63,642 + GFF6816 0.89 -0.0 63,643 - GFF6816 0.89 -2.3 63,643 - GFF6816 0.89 -0.6 63,643 - GFF6816 0.89 -1.7 63,751 + +1.4 63,751 + -0.4 63,751 + -2.1 63,751 + -2.4 63,751 + +0.7 63,752 - +0.1 63,752 - +0.1 63,752 - +0.4 63,752 - -0.5
Or see this region's nucleotide sequence