Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6767 and GFF6768 are separated by 12 nucleotides GFF6768 and GFF6769 are separated by 150 nucleotides GFF6769 and GFF6770 are separated by 38 nucleotides GFF6770 and GFF6771 overlap by 4 nucleotides
GFF6767 - no description, at 14,234 to 14,944
GFF6767
GFF6768 - hypothetical protein, at 14,957 to 15,271
GFF6768
GFF6769 - Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases, at 15,422 to 16,159
GFF6769
GFF6770 - 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21), at 16,198 to 16,842
GFF6770
GFF6771 - 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58), at 16,839 to 17,750
GFF6771
Position (kb) 15
16
17 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 14.663 kb on + strand, within GFF6767 at 14.663 kb on + strand, within GFF6767 at 14.663 kb on + strand, within GFF6767 at 14.663 kb on + strand, within GFF6767 at 14.663 kb on + strand, within GFF6767 at 14.663 kb on + strand, within GFF6767 at 14.663 kb on + strand, within GFF6767 at 14.664 kb on - strand, within GFF6767 at 14.664 kb on - strand, within GFF6767 at 14.664 kb on - strand, within GFF6767 at 14.922 kb on - strand at 14.961 kb on + strand at 14.962 kb on - strand at 14.962 kb on - strand at 14.967 kb on + strand at 14.968 kb on - strand at 14.992 kb on - strand, within GFF6768 at 15.064 kb on - strand, within GFF6768 at 15.066 kb on + strand, within GFF6768 at 15.067 kb on - strand, within GFF6768 at 15.067 kb on - strand, within GFF6768 at 15.067 kb on - strand, within GFF6768 at 15.085 kb on - strand, within GFF6768 at 15.102 kb on + strand, within GFF6768 at 15.102 kb on + strand, within GFF6768 at 15.102 kb on + strand, within GFF6768 at 15.102 kb on + strand, within GFF6768 at 15.105 kb on + strand, within GFF6768 at 15.106 kb on - strand, within GFF6768 at 15.106 kb on - strand, within GFF6768 at 15.126 kb on + strand, within GFF6768 at 15.126 kb on + strand, within GFF6768 at 15.127 kb on - strand, within GFF6768 at 15.127 kb on - strand, within GFF6768 at 15.127 kb on - strand, within GFF6768 at 15.129 kb on + strand, within GFF6768 at 15.129 kb on + strand, within GFF6768 at 15.130 kb on - strand, within GFF6768 at 15.130 kb on - strand, within GFF6768 at 15.130 kb on - strand, within GFF6768 at 15.130 kb on - strand, within GFF6768 at 15.162 kb on + strand, within GFF6768 at 15.162 kb on + strand, within GFF6768 at 15.162 kb on + strand, within GFF6768 at 15.162 kb on + strand, within GFF6768 at 15.162 kb on + strand, within GFF6768 at 15.162 kb on + strand, within GFF6768 at 15.163 kb on - strand, within GFF6768 at 15.163 kb on - strand, within GFF6768 at 15.163 kb on - strand, within GFF6768 at 15.163 kb on - strand, within GFF6768 at 15.163 kb on - strand, within GFF6768 at 15.163 kb on - strand, within GFF6768 at 15.163 kb on - strand, within GFF6768 at 15.259 kb on + strand at 15.332 kb on + strand at 15.332 kb on + strand at 15.333 kb on - strand at 15.333 kb on - strand at 15.333 kb on - strand at 15.363 kb on + strand at 15.363 kb on + strand at 15.363 kb on + strand at 15.363 kb on + strand at 15.363 kb on + strand at 15.364 kb on - strand at 15.364 kb on - strand at 15.377 kb on + strand at 15.377 kb on + strand at 15.378 kb on - strand at 15.378 kb on - strand at 15.594 kb on + strand, within GFF6769 at 15.594 kb on + strand, within GFF6769 at 15.595 kb on - strand, within GFF6769 at 15.595 kb on - strand, within GFF6769 at 15.595 kb on - strand, within GFF6769 at 15.595 kb on - strand, within GFF6769 at 15.597 kb on + strand, within GFF6769 at 15.597 kb on + strand, within GFF6769 at 15.598 kb on - strand, within GFF6769 at 15.609 kb on + strand, within GFF6769 at 15.609 kb on + strand, within GFF6769 at 15.609 kb on + strand, within GFF6769 at 15.610 kb on - strand, within GFF6769 at 15.732 kb on + strand, within GFF6769 at 15.732 kb on + strand, within GFF6769 at 15.732 kb on + strand, within GFF6769 at 15.733 kb on - strand, within GFF6769 at 15.762 kb on + strand, within GFF6769 at 15.762 kb on + strand, within GFF6769 at 15.762 kb on + strand, within GFF6769 at 15.763 kb on - strand, within GFF6769 at 15.763 kb on - strand, within GFF6769 at 16.011 kb on + strand, within GFF6769 at 16.012 kb on - strand, within GFF6769 at 16.012 kb on - strand, within GFF6769 at 16.280 kb on + strand, within GFF6770 at 16.280 kb on + strand, within GFF6770 at 16.280 kb on + strand, within GFF6770 at 16.280 kb on + strand, within GFF6770 at 16.280 kb on + strand, within GFF6770 at 16.280 kb on + strand, within GFF6770 at 16.281 kb on - strand, within GFF6770 at 16.553 kb on + strand, within GFF6770 at 16.553 kb on + strand, within GFF6770 at 16.554 kb on - strand, within GFF6770 at 16.554 kb on - strand, within GFF6770 at 16.554 kb on - strand, within GFF6770 at 16.702 kb on + strand, within GFF6770 at 16.703 kb on - strand, within GFF6770 at 16.703 kb on - strand, within GFF6770 at 17.056 kb on + strand, within GFF6771 at 17.056 kb on + strand, within GFF6771 at 17.056 kb on + strand, within GFF6771 at 17.056 kb on + strand, within GFF6771 at 17.057 kb on - strand, within GFF6771 at 17.057 kb on - strand, within GFF6771 at 17.057 kb on - strand, within GFF6771 at 17.057 kb on - strand, within GFF6771 at 17.057 kb on - strand, within GFF6771 at 17.057 kb on - strand, within GFF6771
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 14,663 + GFF6767 0.60 -2.6 14,663 + GFF6767 0.60 -2.0 14,663 + GFF6767 0.60 -0.6 14,663 + GFF6767 0.60 -0.3 14,663 + GFF6767 0.60 -0.6 14,663 + GFF6767 0.60 +1.1 14,663 + GFF6767 0.60 +1.6 14,664 - GFF6767 0.60 -1.9 14,664 - GFF6767 0.60 -1.2 14,664 - GFF6767 0.60 -4.2 14,922 - -1.1 14,961 + +1.8 14,962 - -1.9 14,962 - -0.9 14,967 + -0.8 14,968 - -3.7 14,992 - GFF6768 0.11 +2.4 15,064 - GFF6768 0.34 -1.0 15,066 + GFF6768 0.35 +0.1 15,067 - GFF6768 0.35 +0.1 15,067 - GFF6768 0.35 +0.8 15,067 - GFF6768 0.35 -0.9 15,085 - GFF6768 0.41 -0.8 15,102 + GFF6768 0.46 -0.7 15,102 + GFF6768 0.46 -0.9 15,102 + GFF6768 0.46 +0.2 15,102 + GFF6768 0.46 +1.5 15,105 + GFF6768 0.47 +1.6 15,106 - GFF6768 0.47 -0.8 15,106 - GFF6768 0.47 -2.9 15,126 + GFF6768 0.54 -2.8 15,126 + GFF6768 0.54 +0.6 15,127 - GFF6768 0.54 -2.2 15,127 - GFF6768 0.54 -0.1 15,127 - GFF6768 0.54 -0.4 15,129 + GFF6768 0.55 +1.2 15,129 + GFF6768 0.55 +1.5 15,130 - GFF6768 0.55 -2.0 15,130 - GFF6768 0.55 +0.9 15,130 - GFF6768 0.55 -2.0 15,130 - GFF6768 0.55 -0.6 15,162 + GFF6768 0.65 -0.1 15,162 + GFF6768 0.65 -1.5 15,162 + GFF6768 0.65 -1.5 15,162 + GFF6768 0.65 -0.6 15,162 + GFF6768 0.65 -1.7 15,162 + GFF6768 0.65 -0.6 15,163 - GFF6768 0.65 -0.6 15,163 - GFF6768 0.65 +0.0 15,163 - GFF6768 0.65 +0.1 15,163 - GFF6768 0.65 +2.4 15,163 - GFF6768 0.65 -1.4 15,163 - GFF6768 0.65 -0.6 15,163 - GFF6768 0.65 -1.7 15,259 + -0.7 15,332 + +0.2 15,332 + -2.3 15,333 - -0.1 15,333 - -2.5 15,333 - -0.6 15,363 + +0.6 15,363 + +1.3 15,363 + +0.3 15,363 + -0.1 15,363 + -1.2 15,364 - +0.4 15,364 - -1.2 15,377 + -0.6 15,377 + -2.1 15,378 - +0.2 15,378 - -0.5 15,594 + GFF6769 0.23 -0.1 15,594 + GFF6769 0.23 -1.7 15,595 - GFF6769 0.23 +0.2 15,595 - GFF6769 0.23 +0.0 15,595 - GFF6769 0.23 -1.2 15,595 - GFF6769 0.23 +0.2 15,597 + GFF6769 0.24 +1.7 15,597 + GFF6769 0.24 -1.1 15,598 - GFF6769 0.24 -0.2 15,609 + GFF6769 0.25 +1.5 15,609 + GFF6769 0.25 -0.6 15,609 + GFF6769 0.25 -1.4 15,610 - GFF6769 0.25 -0.7 15,732 + GFF6769 0.42 -2.6 15,732 + GFF6769 0.42 +0.2 15,732 + GFF6769 0.42 +4.3 15,733 - GFF6769 0.42 +0.4 15,762 + GFF6769 0.46 -0.9 15,762 + GFF6769 0.46 +0.8 15,762 + GFF6769 0.46 -1.2 15,763 - GFF6769 0.46 +1.0 15,763 - GFF6769 0.46 -0.3 16,011 + GFF6769 0.80 -0.6 16,012 - GFF6769 0.80 +0.7 16,012 - GFF6769 0.80 -0.1 16,280 + GFF6770 0.13 -2.3 16,280 + GFF6770 0.13 -2.4 16,280 + GFF6770 0.13 +0.4 16,280 + GFF6770 0.13 -2.6 16,280 + GFF6770 0.13 -1.6 16,280 + GFF6770 0.13 -0.9 16,281 - GFF6770 0.13 -3.1 16,553 + GFF6770 0.55 +0.4 16,553 + GFF6770 0.55 -0.9 16,554 - GFF6770 0.55 -3.4 16,554 - GFF6770 0.55 -2.2 16,554 - GFF6770 0.55 -2.1 16,702 + GFF6770 0.78 -4.2 16,703 - GFF6770 0.78 -5.3 16,703 - GFF6770 0.78 +0.4 17,056 + GFF6771 0.24 +0.5 17,056 + GFF6771 0.24 -0.6 17,056 + GFF6771 0.24 +0.5 17,056 + GFF6771 0.24 +0.7 17,057 - GFF6771 0.24 +1.1 17,057 - GFF6771 0.24 +0.4 17,057 - GFF6771 0.24 -0.1 17,057 - GFF6771 0.24 -0.6 17,057 - GFF6771 0.24 -0.9 17,057 - GFF6771 0.24 -1.2
Or see this region's nucleotide sequence