Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6747 and GFF6748 overlap by 4 nucleotides GFF6748 and GFF6749 are separated by 161 nucleotides GFF6749 and GFF6750 are separated by 108 nucleotides
GFF6747 - Glycosyl transferase, family 2, at 61,144 to 62,229
GFF6747
GFF6748 - Undecaprenyl-diphosphatase BcrC (EC 3.6.1.27), conveys bacitracin resistance, at 62,226 to 62,810
GFF6748
GFF6749 - hypothetical protein, at 62,972 to 63,421
GFF6749
GFF6750 - hypothetical protein, at 63,530 to 64,090
GFF6750
Position (kb) 62
63 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 61.226 kb on + strand at 61.241 kb on + strand at 61.241 kb on + strand at 61.241 kb on + strand at 61.241 kb on + strand at 61.242 kb on - strand at 61.358 kb on + strand, within GFF6747 at 61.358 kb on + strand, within GFF6747 at 61.359 kb on - strand, within GFF6747 at 61.553 kb on + strand, within GFF6747 at 61.554 kb on - strand, within GFF6747 at 61.554 kb on - strand, within GFF6747 at 61.554 kb on - strand, within GFF6747 at 61.554 kb on - strand, within GFF6747 at 61.554 kb on - strand, within GFF6747 at 61.682 kb on + strand, within GFF6747 at 61.682 kb on + strand, within GFF6747 at 61.683 kb on - strand, within GFF6747 at 61.683 kb on - strand, within GFF6747 at 61.745 kb on + strand, within GFF6747 at 61.745 kb on + strand, within GFF6747 at 61.746 kb on - strand, within GFF6747 at 61.746 kb on - strand, within GFF6747 at 61.746 kb on - strand, within GFF6747 at 62.063 kb on + strand, within GFF6747 at 62.064 kb on - strand, within GFF6747 at 62.542 kb on + strand, within GFF6748 at 62.543 kb on - strand, within GFF6748 at 62.611 kb on - strand, within GFF6748 at 62.650 kb on + strand, within GFF6748 at 62.650 kb on + strand, within GFF6748 at 62.650 kb on + strand, within GFF6748 at 62.879 kb on + strand at 63.432 kb on + strand at 63.432 kb on + strand at 63.432 kb on + strand at 63.432 kb on + strand at 63.433 kb on - strand at 63.433 kb on - strand at 63.433 kb on - strand at 63.433 kb on - strand at 63.484 kb on + strand at 63.485 kb on - strand at 63.485 kb on - strand at 63.504 kb on - strand at 63.504 kb on - strand at 63.505 kb on + strand at 63.505 kb on + strand at 63.505 kb on + strand at 63.505 kb on + strand at 63.505 kb on + strand at 63.505 kb on + strand at 63.532 kb on - strand at 63.570 kb on + strand at 63.570 kb on + strand at 63.570 kb on + strand at 63.570 kb on + strand at 63.571 kb on - strand at 63.725 kb on - strand, within GFF6750 at 63.725 kb on - strand, within GFF6750 at 63.725 kb on - strand, within GFF6750 at 63.726 kb on + strand, within GFF6750 at 63.726 kb on + strand, within GFF6750 at 63.726 kb on + strand, within GFF6750 at 63.726 kb on + strand, within GFF6750 at 63.726 kb on + strand, within GFF6750 at 63.727 kb on - strand, within GFF6750 at 63.727 kb on - strand, within GFF6750 at 63.727 kb on - strand, within GFF6750 at 63.727 kb on - strand, within GFF6750 at 63.727 kb on - strand, within GFF6750 at 63.727 kb on - strand, within GFF6750 at 63.727 kb on - strand, within GFF6750
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 61,226 + -0.8 61,241 + +0.6 61,241 + -0.6 61,241 + +1.6 61,241 + -0.4 61,242 - -0.5 61,358 + GFF6747 0.20 +1.0 61,358 + GFF6747 0.20 -2.7 61,359 - GFF6747 0.20 -1.5 61,553 + GFF6747 0.38 -0.2 61,554 - GFF6747 0.38 -0.3 61,554 - GFF6747 0.38 +0.5 61,554 - GFF6747 0.38 +1.7 61,554 - GFF6747 0.38 -2.5 61,554 - GFF6747 0.38 -2.1 61,682 + GFF6747 0.50 +0.3 61,682 + GFF6747 0.50 +0.5 61,683 - GFF6747 0.50 +1.7 61,683 - GFF6747 0.50 +1.2 61,745 + GFF6747 0.55 +0.1 61,745 + GFF6747 0.55 -1.4 61,746 - GFF6747 0.55 -2.5 61,746 - GFF6747 0.55 -1.5 61,746 - GFF6747 0.55 -0.2 62,063 + GFF6747 0.85 -0.5 62,064 - GFF6747 0.85 -0.0 62,542 + GFF6748 0.54 -0.8 62,543 - GFF6748 0.54 -1.7 62,611 - GFF6748 0.66 -1.0 62,650 + GFF6748 0.72 -3.6 62,650 + GFF6748 0.72 +1.6 62,650 + GFF6748 0.72 +1.3 62,879 + +2.2 63,432 + +0.2 63,432 + -2.2 63,432 + +2.2 63,432 + -0.5 63,433 - +1.4 63,433 - -0.2 63,433 - +2.0 63,433 - -1.4 63,484 + -1.6 63,485 - +0.5 63,485 - -0.3 63,504 - +0.4 63,504 - +0.6 63,505 + +1.1 63,505 + -1.0 63,505 + -0.4 63,505 + -0.8 63,505 + +1.4 63,505 + +1.5 63,532 - +0.1 63,570 + -0.7 63,570 + +2.3 63,570 + -0.3 63,570 + +0.2 63,571 - -2.7 63,725 - GFF6750 0.35 -0.7 63,725 - GFF6750 0.35 +2.2 63,725 - GFF6750 0.35 -0.2 63,726 + GFF6750 0.35 +1.0 63,726 + GFF6750 0.35 +1.7 63,726 + GFF6750 0.35 -0.6 63,726 + GFF6750 0.35 +2.8 63,726 + GFF6750 0.35 +0.6 63,727 - GFF6750 0.35 +2.6 63,727 - GFF6750 0.35 -1.8 63,727 - GFF6750 0.35 -0.4 63,727 - GFF6750 0.35 +1.0 63,727 - GFF6750 0.35 -1.2 63,727 - GFF6750 0.35 +0.1 63,727 - GFF6750 0.35 -0.3
Or see this region's nucleotide sequence