Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6717 and GFF6718 are separated by 106 nucleotides GFF6718 and GFF6719 are separated by 7 nucleotides GFF6719 and GFF6720 are separated by 15 nucleotides
GFF6717 - hypothetical protein, at 26,152 to 28,392
GFF6717
GFF6718 - no description, at 28,499 to 28,918
GFF6718
GFF6719 - hypothetical protein, at 28,926 to 29,489
GFF6719
GFF6720 - no description, at 29,505 to 30,554
GFF6720
Position (kb) 28
29 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 27.538 kb on + strand, within GFF6717 at 27.539 kb on - strand, within GFF6717 at 27.541 kb on + strand, within GFF6717 at 27.541 kb on + strand, within GFF6717 at 27.541 kb on + strand, within GFF6717 at 27.542 kb on - strand, within GFF6717 at 27.542 kb on - strand, within GFF6717 at 27.684 kb on + strand, within GFF6717 at 27.685 kb on - strand, within GFF6717 at 27.685 kb on - strand, within GFF6717 at 27.685 kb on - strand, within GFF6717 at 27.685 kb on - strand, within GFF6717 at 27.760 kb on + strand, within GFF6717 at 27.761 kb on - strand, within GFF6717 at 27.852 kb on + strand, within GFF6717 at 27.852 kb on + strand, within GFF6717 at 27.853 kb on - strand, within GFF6717 at 27.853 kb on - strand, within GFF6717 at 28.015 kb on + strand, within GFF6717 at 28.015 kb on + strand, within GFF6717 at 28.016 kb on - strand, within GFF6717 at 28.047 kb on + strand, within GFF6717 at 28.047 kb on + strand, within GFF6717 at 28.102 kb on + strand, within GFF6717 at 28.103 kb on - strand, within GFF6717 at 28.118 kb on + strand, within GFF6717 at 28.153 kb on + strand, within GFF6717 at 28.177 kb on + strand at 28.177 kb on + strand at 28.177 kb on + strand at 28.177 kb on + strand at 28.177 kb on + strand at 28.177 kb on + strand at 28.177 kb on + strand at 28.178 kb on - strand at 28.178 kb on - strand at 28.178 kb on - strand at 28.178 kb on - strand at 28.178 kb on - strand at 28.178 kb on - strand at 28.178 kb on - strand at 28.178 kb on - strand at 28.178 kb on - strand at 28.178 kb on - strand at 28.179 kb on + strand at 28.179 kb on + strand at 28.179 kb on + strand at 28.180 kb on - strand at 28.288 kb on + strand at 28.315 kb on + strand at 28.315 kb on + strand at 28.316 kb on - strand at 28.316 kb on - strand at 28.575 kb on - strand, within GFF6718 at 28.609 kb on + strand, within GFF6718 at 28.839 kb on - strand, within GFF6718 at 29.070 kb on - strand, within GFF6719 at 29.079 kb on + strand, within GFF6719 at 29.169 kb on + strand, within GFF6719 at 29.169 kb on + strand, within GFF6719 at 29.169 kb on + strand, within GFF6719 at 29.169 kb on + strand, within GFF6719 at 29.169 kb on + strand, within GFF6719 at 29.170 kb on - strand, within GFF6719 at 29.170 kb on - strand, within GFF6719 at 29.170 kb on - strand, within GFF6719 at 29.170 kb on - strand, within GFF6719 at 29.170 kb on - strand, within GFF6719 at 29.170 kb on - strand, within GFF6719 at 29.170 kb on - strand, within GFF6719 at 29.170 kb on - strand, within GFF6719 at 29.220 kb on + strand, within GFF6719 at 29.221 kb on - strand, within GFF6719 at 29.221 kb on - strand, within GFF6719 at 29.221 kb on - strand, within GFF6719 at 29.221 kb on - strand, within GFF6719 at 29.221 kb on - strand, within GFF6719 at 29.334 kb on + strand, within GFF6719 at 29.335 kb on - strand, within GFF6719 at 29.335 kb on - strand, within GFF6719 at 29.369 kb on + strand, within GFF6719 at 29.370 kb on - strand, within GFF6719 at 29.700 kb on + strand, within GFF6720 at 29.701 kb on - strand, within GFF6720 at 29.703 kb on + strand, within GFF6720
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 27,538 + GFF6717 0.62 -0.5 27,539 - GFF6717 0.62 -0.3 27,541 + GFF6717 0.62 -1.4 27,541 + GFF6717 0.62 +1.0 27,541 + GFF6717 0.62 -0.8 27,542 - GFF6717 0.62 -1.0 27,542 - GFF6717 0.62 +2.2 27,684 + GFF6717 0.68 +0.6 27,685 - GFF6717 0.68 +1.2 27,685 - GFF6717 0.68 +1.2 27,685 - GFF6717 0.68 -1.6 27,685 - GFF6717 0.68 +0.1 27,760 + GFF6717 0.72 -0.8 27,761 - GFF6717 0.72 +0.1 27,852 + GFF6717 0.76 -0.1 27,852 + GFF6717 0.76 -1.2 27,853 - GFF6717 0.76 -0.3 27,853 - GFF6717 0.76 +1.0 28,015 + GFF6717 0.83 -0.6 28,015 + GFF6717 0.83 -2.5 28,016 - GFF6717 0.83 -0.3 28,047 + GFF6717 0.85 -0.4 28,047 + GFF6717 0.85 -3.2 28,102 + GFF6717 0.87 -0.4 28,103 - GFF6717 0.87 -1.5 28,118 + GFF6717 0.88 -0.6 28,153 + GFF6717 0.89 -0.0 28,177 + -0.2 28,177 + +1.8 28,177 + -0.8 28,177 + +0.9 28,177 + -1.4 28,177 + +0.3 28,177 + -1.3 28,178 - -3.4 28,178 - -2.5 28,178 - +1.1 28,178 - -1.9 28,178 - -0.7 28,178 - +0.2 28,178 - -0.7 28,178 - -0.3 28,178 - -3.1 28,178 - -2.0 28,179 + +2.2 28,179 + -0.3 28,179 + +1.5 28,180 - -0.5 28,288 + -2.4 28,315 + -0.9 28,315 + +0.1 28,316 - +0.8 28,316 - -0.4 28,575 - GFF6718 0.18 -2.2 28,609 + GFF6718 0.26 +0.3 28,839 - GFF6718 0.81 -1.1 29,070 - GFF6719 0.26 -0.2 29,079 + GFF6719 0.27 -0.6 29,169 + GFF6719 0.43 -0.5 29,169 + GFF6719 0.43 +0.6 29,169 + GFF6719 0.43 -2.5 29,169 + GFF6719 0.43 -0.8 29,169 + GFF6719 0.43 -0.2 29,170 - GFF6719 0.43 -0.9 29,170 - GFF6719 0.43 -2.9 29,170 - GFF6719 0.43 -1.2 29,170 - GFF6719 0.43 -2.8 29,170 - GFF6719 0.43 -0.6 29,170 - GFF6719 0.43 -0.1 29,170 - GFF6719 0.43 +0.2 29,170 - GFF6719 0.43 +2.4 29,220 + GFF6719 0.52 +0.4 29,221 - GFF6719 0.52 +0.3 29,221 - GFF6719 0.52 +0.0 29,221 - GFF6719 0.52 +1.0 29,221 - GFF6719 0.52 +0.6 29,221 - GFF6719 0.52 -1.2 29,334 + GFF6719 0.72 -0.6 29,335 - GFF6719 0.73 -2.2 29,335 - GFF6719 0.73 +0.5 29,369 + GFF6719 0.79 -0.8 29,370 - GFF6719 0.79 +1.2 29,700 + GFF6720 0.19 +1.8 29,701 - GFF6720 0.19 +0.6 29,703 + GFF6720 0.19 +1.7
Or see this region's nucleotide sequence