Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6710 and GFF6711 are separated by 23 nucleotides GFF6711 and GFF6712 overlap by 1 nucleotides GFF6712 and GFF6713 are separated by 67 nucleotides
GFF6710 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 18,418 to 19,371
GFF6710
GFF6711 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 19,395 to 20,219
GFF6711
GFF6712 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 20,219 to 21,259
GFF6712
GFF6713 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 21,327 to 22,304
GFF6713
Position (kb) 20
21
22 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 19.307 kb on - strand at 19.307 kb on - strand at 19.339 kb on + strand at 19.339 kb on + strand at 19.339 kb on + strand at 19.340 kb on - strand at 19.584 kb on + strand, within GFF6711 at 19.584 kb on + strand, within GFF6711 at 19.585 kb on - strand, within GFF6711 at 19.585 kb on - strand, within GFF6711 at 19.585 kb on - strand, within GFF6711 at 19.585 kb on - strand, within GFF6711 at 19.585 kb on - strand, within GFF6711 at 19.824 kb on + strand, within GFF6711 at 19.825 kb on - strand, within GFF6711 at 19.942 kb on + strand, within GFF6711 at 19.943 kb on - strand, within GFF6711 at 20.092 kb on - strand, within GFF6711 at 20.092 kb on - strand, within GFF6711 at 20.939 kb on + strand, within GFF6712 at 21.002 kb on + strand, within GFF6712 at 21.003 kb on - strand, within GFF6712 at 21.312 kb on + strand at 21.313 kb on - strand at 21.313 kb on - strand at 21.313 kb on - strand at 21.313 kb on - strand at 21.313 kb on - strand at 21.313 kb on - strand at 21.313 kb on - strand at 21.373 kb on - strand at 21.485 kb on - strand, within GFF6713 at 21.485 kb on - strand, within GFF6713 at 21.485 kb on - strand, within GFF6713 at 22.002 kb on + strand, within GFF6713 at 22.003 kb on - strand, within GFF6713 at 22.003 kb on - strand, within GFF6713 at 22.066 kb on - strand, within GFF6713 at 22.257 kb on + strand at 22.258 kb on - strand at 22.258 kb on - strand at 22.258 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 19,307 - -1.0 19,307 - +1.0 19,339 + -1.0 19,339 + +1.4 19,339 + -0.2 19,340 - -1.0 19,584 + GFF6711 0.23 +0.6 19,584 + GFF6711 0.23 -0.2 19,585 - GFF6711 0.23 -0.9 19,585 - GFF6711 0.23 -0.2 19,585 - GFF6711 0.23 +1.1 19,585 - GFF6711 0.23 +0.9 19,585 - GFF6711 0.23 -0.8 19,824 + GFF6711 0.52 -0.6 19,825 - GFF6711 0.52 +1.0 19,942 + GFF6711 0.66 +0.7 19,943 - GFF6711 0.66 +0.0 20,092 - GFF6711 0.84 +0.2 20,092 - GFF6711 0.84 +0.8 20,939 + GFF6712 0.69 +0.2 21,002 + GFF6712 0.75 +0.8 21,003 - GFF6712 0.75 +0.4 21,312 + -2.1 21,313 - -0.2 21,313 - -2.9 21,313 - +1.6 21,313 - +0.1 21,313 - -0.2 21,313 - -0.1 21,313 - -1.4 21,373 - +0.6 21,485 - GFF6713 0.16 -1.4 21,485 - GFF6713 0.16 +0.5 21,485 - GFF6713 0.16 -0.1 22,002 + GFF6713 0.69 +1.4 22,003 - GFF6713 0.69 -0.2 22,003 - GFF6713 0.69 -2.9 22,066 - GFF6713 0.76 +2.2 22,257 + -1.5 22,258 - +2.6 22,258 - -1.5 22,258 - +0.2
Or see this region's nucleotide sequence