Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6572 and GFF6573 overlap by 4 nucleotides GFF6573 and GFF6574 are separated by 12 nucleotides
GFF6572 - Conjugative transfer protein TrbG, at 13,220 to 14,227
GFF6572
GFF6573 - Conjugative transfer protein TrbF, at 14,224 to 14,928
GFF6573
GFF6574 - Conjugative transfer protein TrbL, at 14,941 to 16,266
GFF6574
Position (kb) 14
15 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 13.329 kb on + strand, within GFF6572 at 13.330 kb on - strand, within GFF6572 at 13.330 kb on - strand, within GFF6572 at 13.347 kb on + strand, within GFF6572 at 13.348 kb on - strand, within GFF6572 at 13.348 kb on - strand, within GFF6572 at 13.434 kb on + strand, within GFF6572 at 13.434 kb on + strand, within GFF6572 at 13.434 kb on + strand, within GFF6572 at 13.435 kb on - strand, within GFF6572 at 13.435 kb on - strand, within GFF6572 at 13.435 kb on - strand, within GFF6572 at 13.659 kb on + strand, within GFF6572 at 13.659 kb on + strand, within GFF6572 at 13.660 kb on - strand, within GFF6572 at 13.762 kb on + strand, within GFF6572 at 13.762 kb on + strand, within GFF6572 at 13.762 kb on + strand, within GFF6572 at 13.860 kb on + strand, within GFF6572 at 13.860 kb on + strand, within GFF6572 at 13.860 kb on + strand, within GFF6572 at 13.861 kb on - strand, within GFF6572 at 13.861 kb on - strand, within GFF6572 at 13.861 kb on - strand, within GFF6572 at 13.869 kb on + strand, within GFF6572 at 13.870 kb on - strand, within GFF6572 at 13.914 kb on + strand, within GFF6572 at 13.914 kb on + strand, within GFF6572 at 13.914 kb on + strand, within GFF6572 at 13.915 kb on - strand, within GFF6572 at 13.915 kb on - strand, within GFF6572 at 13.915 kb on - strand, within GFF6572 at 14.209 kb on + strand at 14.210 kb on - strand at 14.210 kb on - strand at 14.210 kb on - strand at 14.282 kb on + strand at 14.282 kb on + strand at 14.282 kb on + strand at 14.282 kb on + strand at 14.282 kb on + strand at 14.282 kb on + strand at 14.282 kb on + strand at 14.282 kb on + strand at 14.283 kb on - strand at 14.283 kb on - strand at 14.283 kb on - strand at 14.550 kb on - strand, within GFF6573 at 14.550 kb on - strand, within GFF6573 at 14.631 kb on - strand, within GFF6573 at 14.631 kb on - strand, within GFF6573 at 14.718 kb on - strand, within GFF6573 at 14.718 kb on - strand, within GFF6573 at 14.718 kb on - strand, within GFF6573 at 14.718 kb on - strand, within GFF6573
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 13,329 + GFF6572 0.11 +2.1 13,330 - GFF6572 0.11 -2.4 13,330 - GFF6572 0.11 +0.5 13,347 + GFF6572 0.13 +0.9 13,348 - GFF6572 0.13 -1.1 13,348 - GFF6572 0.13 +0.8 13,434 + GFF6572 0.21 -1.9 13,434 + GFF6572 0.21 -0.0 13,434 + GFF6572 0.21 -0.7 13,435 - GFF6572 0.21 +2.4 13,435 - GFF6572 0.21 -0.6 13,435 - GFF6572 0.21 -3.6 13,659 + GFF6572 0.44 +1.0 13,659 + GFF6572 0.44 -1.1 13,660 - GFF6572 0.44 +0.2 13,762 + GFF6572 0.54 +1.5 13,762 + GFF6572 0.54 -0.8 13,762 + GFF6572 0.54 +1.4 13,860 + GFF6572 0.63 -0.1 13,860 + GFF6572 0.63 -2.6 13,860 + GFF6572 0.63 +1.7 13,861 - GFF6572 0.64 -3.4 13,861 - GFF6572 0.64 +2.3 13,861 - GFF6572 0.64 -1.0 13,869 + GFF6572 0.64 +0.7 13,870 - GFF6572 0.64 +0.3 13,914 + GFF6572 0.69 +3.1 13,914 + GFF6572 0.69 +0.6 13,914 + GFF6572 0.69 -1.0 13,915 - GFF6572 0.69 +0.2 13,915 - GFF6572 0.69 -0.1 13,915 - GFF6572 0.69 -1.2 14,209 + -2.1 14,210 - -0.4 14,210 - +0.0 14,210 - -3.0 14,282 + +1.5 14,282 + -3.0 14,282 + +0.4 14,282 + +0.1 14,282 + -2.1 14,282 + -2.0 14,282 + +0.2 14,282 + -3.2 14,283 - -1.6 14,283 - -2.2 14,283 - +1.0 14,550 - GFF6573 0.46 -1.8 14,550 - GFF6573 0.46 +0.9 14,631 - GFF6573 0.58 +1.9 14,631 - GFF6573 0.58 -0.6 14,718 - GFF6573 0.70 -2.9 14,718 - GFF6573 0.70 -1.0 14,718 - GFF6573 0.70 -2.3 14,718 - GFF6573 0.70 +0.6
Or see this region's nucleotide sequence