Strain Fitness in Variovorax sp. SCN45 around GFF65

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
80,642	-		GFF64	0.14	-1.4
80,642	-		GFF64	0.14	+2.6
80,642	-		GFF64	0.14	-1.1
80,765	-		GFF64	0.27	+0.5
80,765	-		GFF64	0.27	+0.6
80,887	+		GFF64	0.40	-0.2
80,888	-		GFF64	0.40	+1.8
80,888	-		GFF64	0.40	+0.0
81,058	+		GFF64	0.58	-0.4
81,058	+		GFF64	0.58	-3.6
81,058	+		GFF64	0.58	+0.4
81,058	+		GFF64	0.58	-0.1
81,058	+		GFF64	0.58	-0.9
81,059	-		GFF64	0.58	-1.4
81,059	-		GFF64	0.58	+1.8
81,214	+		GFF64	0.74	-0.3
81,214	+		GFF64	0.74	-1.0
81,214	+		GFF64	0.74	+1.2
81,215	-		GFF64	0.74	-1.6
81,215	-		GFF64	0.74	+0.1
81,215	-		GFF64	0.74	-0.0
81,477	+				-0.9
81,477	+				+0.4
81,477	+				-1.6
81,477	+				-1.9
81,477	+				-3.4
81,477	+				-1.8
81,477	+				+0.2
81,477	+				+1.4
81,478	-				-2.8
81,478	-				-1.7
81,478	-				-1.6
81,478	-				+0.5
81,478	-				+0.2
81,481	+				+0.1
81,482	-				-1.8
81,482	-				+0.4
81,506	+				+0.0
81,630	+		GFF65	0.14	+1.0
81,652	-		GFF65	0.16	-0.8
81,652	-		GFF65	0.16	-2.0
81,652	-		GFF65	0.16	-1.2
81,706	-		GFF65	0.22	-1.2
81,706	-		GFF65	0.22	-1.9
81,723	+		GFF65	0.24	+1.9
81,723	+		GFF65	0.24	-0.6
81,724	-		GFF65	0.24	-1.2
81,724	-		GFF65	0.24	+3.0
81,724	-		GFF65	0.24	-4.2
81,724	-		GFF65	0.24	+2.0
81,843	+		GFF65	0.37	-2.6
81,843	+		GFF65	0.37	-1.2
81,844	-		GFF65	0.37	-0.2
81,844	-		GFF65	0.37	-0.8
81,844	-		GFF65	0.37	-3.0
81,844	-		GFF65	0.37	-1.9
81,844	-		GFF65	0.37	-0.4
81,948	+		GFF65	0.48	-0.6
81,948	+		GFF65	0.48	+0.8
81,948	+		GFF65	0.48	-0.6
81,948	+		GFF65	0.48	-0.1
81,948	+		GFF65	0.48	-0.6
81,949	-		GFF65	0.48	+0.6
81,949	-		GFF65	0.48	-2.1
81,949	-		GFF65	0.48	-0.4
82,044	+		GFF65	0.58	+1.0
82,045	-		GFF65	0.58	-1.2
82,323	+		GFF65	0.88	-1.9
82,323	+		GFF65	0.88	+2.5
82,324	-		GFF65	0.88	-3.4
82,431	+				+0.8
82,540	+				+1.8
82,541	-				+2.6
82,541	-				+0.5
82,544	+				-0.9
82,544	+				-1.0
82,544	+				+0.1
82,544	+				-1.1
82,544	+				-2.2
82,544	+				-0.9
82,544	+				-0.8
82,544	+				+1.1
82,545	-				-2.1
82,545	-				-0.6
82,545	-				+3.3
82,545	-				-2.4
82,545	-				-0.2
82,545	-				+1.8
82,545	-				-1.4
82,545	-				-0.6
82,545	-				-1.2
82,546	+				-1.9
82,876	+		GFF66	0.33	+1.1
83,122	+		GFF66	0.53	-0.6
83,122	+		GFF66	0.53	+0.5
83,191	+		GFF66	0.59	-0.6