Strain Fitness in Variovorax sp. SCN45 around GFF6490

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
66,856	+		GFF6488	0.50	-0.5
66,856	+		GFF6488	0.50	+0.8
66,856	+		GFF6488	0.50	+0.2
66,857	-		GFF6488	0.51	-0.1
66,857	-		GFF6488	0.51	-0.3
66,870	-		GFF6488	0.62	-0.1
66,915	+				-0.6
66,915	+				+0.4
66,915	+				+0.6
66,915	+				+2.5
66,916	-				-1.2
66,916	-				+0.5
66,916	-				-1.4
66,916	-				-2.2
66,973	+				+1.0
67,113	+				-2.1
67,113	+				-2.8
67,113	+				-1.9
67,113	+				+2.0
67,113	+				-0.2
67,113	+				-1.2
67,113	+				-1.3
67,113	-				-0.0
67,114	-				+1.0
67,114	-				-1.3
67,114	-				+0.9
67,114	-				+1.4
67,114	-				+0.5
67,128	+				+1.7
67,155	+				-0.3
67,155	+				-1.8
67,155	+				-2.3
67,155	+				-1.2
67,155	+				+0.8
67,156	-				-0.3
67,156	-				-1.2
67,156	-				+1.4
67,156	-				-0.2
67,156	-				-0.6
67,156	-				-0.3
67,203	+				-1.9
67,203	+				-2.1
67,203	+				+2.5
67,204	-				+0.5
67,204	-				+4.8
67,447	+				-2.6
67,448	-				-2.0
67,448	-				-0.0
67,471	+		GFF6489	0.13	-0.3
67,471	+		GFF6489	0.13	+0.7
67,471	+		GFF6489	0.13	-1.7
67,471	+		GFF6489	0.13	+0.6
67,471	+		GFF6489	0.13	-1.0
67,472	-		GFF6489	0.13	+1.7
67,531	+		GFF6489	0.27	-0.7
67,531	+		GFF6489	0.27	+0.4
67,531	+		GFF6489	0.27	-1.5
67,531	+		GFF6489	0.27	-2.2
67,531	+		GFF6489	0.27	-0.6
67,531	+		GFF6489	0.27	-0.1
67,531	+		GFF6489	0.27	-0.8
67,531	+		GFF6489	0.27	+0.2
67,532	-		GFF6489	0.27	-0.3
67,532	-		GFF6489	0.27	-0.8
67,532	-		GFF6489	0.27	-0.8
67,532	-		GFF6489	0.27	-0.9
67,532	-		GFF6489	0.27	+0.4
67,532	-		GFF6489	0.27	-2.0
67,532	-		GFF6489	0.27	-2.2
67,532	-		GFF6489	0.27	-0.9
67,532	-		GFF6489	0.27	-0.3
67,532	-		GFF6489	0.27	+1.1
67,741	+		GFF6489	0.74	+0.7
67,742	-		GFF6489	0.74	-3.5
67,742	-		GFF6489	0.74	-1.3
67,764	-		GFF6489	0.79	-0.8
67,959	+		GFF6490	0.15	-1.2
67,959	+		GFF6490	0.15	+1.3
67,960	-		GFF6490	0.15	-0.3
67,960	-		GFF6490	0.15	-1.9
67,960	-		GFF6490	0.15	-1.7
67,983	+		GFF6490	0.19	+1.4
68,091	+		GFF6490	0.34	-0.2
68,091	+		GFF6490	0.34	-0.9
68,091	+		GFF6490	0.34	-0.0
68,091	+		GFF6490	0.34	+1.2
68,091	+		GFF6490	0.34	+1.1
68,091	+		GFF6490	0.34	+0.4
68,091	+		GFF6490	0.34	-0.2
68,092	-		GFF6490	0.34	-0.0
68,092	-		GFF6490	0.34	-1.2
68,143	-		GFF6490	0.42	-1.3
68,143	-		GFF6490	0.42	-0.4
68,143	-		GFF6490	0.42	+0.2
68,143	-		GFF6490	0.42	-2.3
68,226	+		GFF6490	0.54	+0.4
68,226	+		GFF6490	0.54	+1.5
68,226	+		GFF6490	0.54	-0.5
68,226	+		GFF6490	0.54	-1.0
68,227	-		GFF6490	0.54	-0.8
68,227	-		GFF6490	0.54	+1.1
68,289	+		GFF6490	0.63	+0.6
68,289	+		GFF6490	0.63	+0.4
68,289	+		GFF6490	0.63	-0.5
68,289	+		GFF6490	0.63	+0.5
68,290	-		GFF6490	0.63	+0.8
68,290	-		GFF6490	0.63	-0.0
68,290	-		GFF6490	0.63	-0.6
68,290	-		GFF6490	0.63	-0.3
68,290	-		GFF6490	0.63	+1.0
68,474	+		GFF6490	0.90	-0.0
68,666	+				-1.7
68,667	-				+0.5
68,813	+		GFF6491	0.27	-0.8
69,005	+		GFF6491	0.55	-1.2
69,005	+		GFF6491	0.55	-0.3
69,005	+		GFF6491	0.55	+1.7
69,005	+		GFF6491	0.55	+0.8
69,006	-		GFF6491	0.55	-1.6
69,006	-		GFF6491	0.55	-0.1
69,006	-		GFF6491	0.55	+1.5
69,006	-		GFF6491	0.55	+2.1
69,006	-		GFF6491	0.55	-1.2
69,006	-		GFF6491	0.55	-1.0
69,006	-		GFF6491	0.55	-0.3