Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6456 and GFF6457 are separated by 57 nucleotides GFF6457 and GFF6458 overlap by 14 nucleotides GFF6458 and GFF6459 are separated by 142 nucleotides GFF6459 and GFF6460 overlap by 4 nucleotides
GFF6456 - Lipid A phosphoethanolamine transferase, putative, at 33,482 to 35,233
GFF6456
GFF6457 - no description, at 35,291 to 35,872
GFF6457
GFF6458 - Lipid A 4'-phosphatase LpxF-like, putative, at 35,859 to 36,563
GFF6458
GFF6459 - Two-component transcriptional regulatory protein BasR/PmrA (activated by BasS/PmrB), at 36,706 to 37,380
GFF6459
GFF6460 - Sensor protein BasS/PmrB (activates BasR/PmrA), at 37,377 to 38,732
GFF6460
Position (kb) 35
36
37 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 34.869 kb on + strand, within GFF6456 at 34.869 kb on + strand, within GFF6456 at 34.869 kb on + strand, within GFF6456 at 34.869 kb on + strand, within GFF6456 at 34.869 kb on + strand, within GFF6456 at 34.869 kb on + strand, within GFF6456 at 34.869 kb on + strand, within GFF6456 at 34.869 kb on + strand, within GFF6456 at 34.869 kb on + strand, within GFF6456 at 34.869 kb on + strand, within GFF6456 at 34.870 kb on - strand, within GFF6456 at 34.870 kb on - strand, within GFF6456 at 34.870 kb on - strand, within GFF6456 at 34.870 kb on - strand, within GFF6456 at 34.870 kb on - strand, within GFF6456 at 34.870 kb on - strand, within GFF6456 at 34.870 kb on - strand, within GFF6456 at 34.870 kb on - strand, within GFF6456 at 34.870 kb on - strand, within GFF6456 at 34.870 kb on - strand, within GFF6456 at 34.870 kb on - strand, within GFF6456 at 34.870 kb on - strand, within GFF6456 at 35.004 kb on + strand, within GFF6456 at 35.004 kb on + strand, within GFF6456 at 35.004 kb on + strand, within GFF6456 at 35.004 kb on + strand, within GFF6456 at 35.004 kb on + strand, within GFF6456 at 35.004 kb on + strand, within GFF6456 at 35.004 kb on + strand, within GFF6456 at 35.004 kb on + strand, within GFF6456 at 35.004 kb on + strand, within GFF6456 at 35.004 kb on + strand, within GFF6456 at 35.004 kb on + strand, within GFF6456 at 35.004 kb on + strand, within GFF6456 at 35.005 kb on - strand, within GFF6456 at 35.005 kb on - strand, within GFF6456 at 35.005 kb on - strand, within GFF6456 at 35.005 kb on - strand, within GFF6456 at 35.005 kb on - strand, within GFF6456 at 35.005 kb on - strand, within GFF6456 at 35.005 kb on - strand, within GFF6456 at 35.005 kb on - strand, within GFF6456 at 35.005 kb on - strand, within GFF6456 at 35.005 kb on - strand, within GFF6456 at 35.005 kb on - strand, within GFF6456 at 35.066 kb on + strand at 35.066 kb on + strand at 35.067 kb on - strand at 35.067 kb on - strand at 35.073 kb on + strand at 35.074 kb on - strand at 35.074 kb on - strand at 35.191 kb on + strand at 35.191 kb on + strand at 35.191 kb on + strand at 35.191 kb on + strand at 35.191 kb on + strand at 35.191 kb on + strand at 35.192 kb on - strand at 35.192 kb on - strand at 35.239 kb on + strand at 35.239 kb on + strand at 35.239 kb on + strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.244 kb on + strand at 35.244 kb on + strand at 35.244 kb on + strand at 35.244 kb on + strand at 35.244 kb on + strand at 35.244 kb on + strand at 35.244 kb on + strand at 35.244 kb on + strand at 35.244 kb on + strand at 35.244 kb on + strand at 35.245 kb on - strand at 35.245 kb on - strand at 35.245 kb on - strand at 35.245 kb on - strand at 35.245 kb on - strand at 35.245 kb on - strand at 35.245 kb on - strand at 35.245 kb on - strand at 35.263 kb on + strand at 35.263 kb on + strand at 35.264 kb on - strand at 35.354 kb on - strand, within GFF6457 at 35.354 kb on - strand, within GFF6457 at 35.395 kb on + strand, within GFF6457 at 35.395 kb on + strand, within GFF6457 at 35.395 kb on + strand, within GFF6457 at 35.396 kb on - strand, within GFF6457 at 35.396 kb on - strand, within GFF6457 at 35.396 kb on - strand, within GFF6457 at 35.396 kb on - strand, within GFF6457 at 35.457 kb on + strand, within GFF6457 at 35.457 kb on + strand, within GFF6457 at 35.458 kb on - strand, within GFF6457 at 35.458 kb on - strand, within GFF6457 at 35.458 kb on - strand, within GFF6457 at 35.458 kb on - strand, within GFF6457 at 35.622 kb on + strand, within GFF6457 at 35.623 kb on - strand, within GFF6457 at 35.623 kb on - strand, within GFF6457 at 35.623 kb on - strand, within GFF6457 at 35.863 kb on + strand at 35.864 kb on - strand at 35.972 kb on + strand, within GFF6458 at 35.972 kb on + strand, within GFF6458 at 35.983 kb on + strand, within GFF6458 at 35.983 kb on + strand, within GFF6458 at 35.983 kb on + strand, within GFF6458 at 35.983 kb on + strand, within GFF6458 at 35.983 kb on + strand, within GFF6458 at 35.983 kb on + strand, within GFF6458 at 35.983 kb on + strand, within GFF6458 at 35.983 kb on + strand, within GFF6458 at 35.984 kb on - strand, within GFF6458 at 35.984 kb on - strand, within GFF6458 at 35.984 kb on - strand, within GFF6458 at 35.984 kb on - strand, within GFF6458 at 36.091 kb on + strand, within GFF6458 at 36.091 kb on + strand, within GFF6458 at 36.092 kb on - strand, within GFF6458 at 36.092 kb on - strand, within GFF6458 at 36.092 kb on - strand, within GFF6458 at 36.092 kb on - strand, within GFF6458 at 36.092 kb on - strand, within GFF6458 at 36.103 kb on + strand, within GFF6458 at 36.103 kb on + strand, within GFF6458 at 36.103 kb on + strand, within GFF6458 at 36.103 kb on + strand, within GFF6458 at 36.103 kb on + strand, within GFF6458 at 36.104 kb on - strand, within GFF6458 at 36.104 kb on - strand, within GFF6458 at 36.104 kb on - strand, within GFF6458 at 36.104 kb on - strand, within GFF6458 at 36.104 kb on - strand, within GFF6458 at 36.187 kb on + strand, within GFF6458 at 36.187 kb on + strand, within GFF6458 at 36.188 kb on - strand, within GFF6458 at 36.188 kb on - strand, within GFF6458 at 36.188 kb on - strand, within GFF6458 at 36.398 kb on + strand, within GFF6458 at 36.399 kb on - strand, within GFF6458 at 36.435 kb on + strand, within GFF6458 at 36.436 kb on - strand, within GFF6458 at 36.654 kb on - strand at 36.654 kb on - strand at 36.654 kb on - strand at 36.675 kb on + strand at 36.676 kb on - strand at 36.713 kb on + strand at 36.713 kb on + strand at 36.713 kb on + strand at 36.714 kb on - strand at 36.760 kb on + strand at 36.760 kb on + strand at 36.761 kb on - strand at 36.838 kb on + strand, within GFF6459 at 36.997 kb on + strand, within GFF6459 at 36.998 kb on - strand, within GFF6459 at 36.998 kb on - strand, within GFF6459 at 37.012 kb on + strand, within GFF6459 at 37.012 kb on + strand, within GFF6459 at 37.013 kb on - strand, within GFF6459 at 37.013 kb on - strand, within GFF6459 at 37.240 kb on + strand, within GFF6459 at 37.240 kb on + strand, within GFF6459 at 37.346 kb on - strand at 37.494 kb on + strand at 37.495 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 34,869 + GFF6456 0.79 -0.3 34,869 + GFF6456 0.79 +0.1 34,869 + GFF6456 0.79 -1.3 34,869 + GFF6456 0.79 +0.5 34,869 + GFF6456 0.79 -0.4 34,869 + GFF6456 0.79 -0.4 34,869 + GFF6456 0.79 +3.6 34,869 + GFF6456 0.79 +1.8 34,869 + GFF6456 0.79 +0.4 34,869 + GFF6456 0.79 -0.3 34,870 - GFF6456 0.79 -1.6 34,870 - GFF6456 0.79 -1.5 34,870 - GFF6456 0.79 +1.1 34,870 - GFF6456 0.79 -2.3 34,870 - GFF6456 0.79 +0.1 34,870 - GFF6456 0.79 -0.6 34,870 - GFF6456 0.79 -0.0 34,870 - GFF6456 0.79 -2.7 34,870 - GFF6456 0.79 -2.2 34,870 - GFF6456 0.79 -0.0 34,870 - GFF6456 0.79 -0.6 34,870 - GFF6456 0.79 -1.2 35,004 + GFF6456 0.87 -1.5 35,004 + GFF6456 0.87 -1.5 35,004 + GFF6456 0.87 +1.6 35,004 + GFF6456 0.87 -1.9 35,004 + GFF6456 0.87 -3.0 35,004 + GFF6456 0.87 -1.7 35,004 + GFF6456 0.87 +1.0 35,004 + GFF6456 0.87 -0.2 35,004 + GFF6456 0.87 +1.4 35,004 + GFF6456 0.87 -1.0 35,004 + GFF6456 0.87 -1.3 35,004 + GFF6456 0.87 -1.3 35,005 - GFF6456 0.87 -1.2 35,005 - GFF6456 0.87 -3.4 35,005 - GFF6456 0.87 +0.5 35,005 - GFF6456 0.87 -1.8 35,005 - GFF6456 0.87 -1.2 35,005 - GFF6456 0.87 +0.8 35,005 - GFF6456 0.87 +1.0 35,005 - GFF6456 0.87 +1.3 35,005 - GFF6456 0.87 -3.4 35,005 - GFF6456 0.87 -2.1 35,005 - GFF6456 0.87 -1.5 35,066 + -2.5 35,066 + +2.0 35,067 - +0.5 35,067 - +0.4 35,073 + +4.1 35,074 - -0.3 35,074 - +0.3 35,191 + -0.3 35,191 + -1.3 35,191 + +0.2 35,191 + +1.0 35,191 + -0.0 35,191 + +1.3 35,192 - -1.3 35,192 - +1.0 35,239 + -0.0 35,239 + -0.9 35,239 + -2.0 35,240 - -1.9 35,240 - -0.0 35,240 - -1.0 35,240 - -0.6 35,240 - +0.7 35,240 - +0.5 35,244 + +0.3 35,244 + -0.6 35,244 + +0.2 35,244 + -1.7 35,244 + +0.1 35,244 + +0.5 35,244 + -2.6 35,244 + +0.1 35,244 + +1.1 35,244 + -0.3 35,245 - -2.6 35,245 - -1.3 35,245 - +1.9 35,245 - -4.0 35,245 - -3.2 35,245 - -0.3 35,245 - -1.7 35,245 - -2.2 35,263 + +0.7 35,263 + -1.2 35,264 - -1.9 35,354 - GFF6457 0.11 -0.0 35,354 - GFF6457 0.11 +0.6 35,395 + GFF6457 0.18 +1.3 35,395 + GFF6457 0.18 -1.2 35,395 + GFF6457 0.18 -0.2 35,396 - GFF6457 0.18 +2.0 35,396 - GFF6457 0.18 +1.3 35,396 - GFF6457 0.18 -2.2 35,396 - GFF6457 0.18 +0.3 35,457 + GFF6457 0.29 +1.7 35,457 + GFF6457 0.29 -0.7 35,458 - GFF6457 0.29 +1.1 35,458 - GFF6457 0.29 +0.4 35,458 - GFF6457 0.29 +1.3 35,458 - GFF6457 0.29 -0.6 35,622 + GFF6457 0.57 -0.4 35,623 - GFF6457 0.57 +0.1 35,623 - GFF6457 0.57 +1.9 35,623 - GFF6457 0.57 -0.0 35,863 + +0.8 35,864 - -1.3 35,972 + GFF6458 0.16 +0.4 35,972 + GFF6458 0.16 -3.1 35,983 + GFF6458 0.18 -0.8 35,983 + GFF6458 0.18 -0.3 35,983 + GFF6458 0.18 -1.0 35,983 + GFF6458 0.18 +0.4 35,983 + GFF6458 0.18 -2.0 35,983 + GFF6458 0.18 -0.2 35,983 + GFF6458 0.18 -0.6 35,983 + GFF6458 0.18 -0.1 35,984 - GFF6458 0.18 -0.4 35,984 - GFF6458 0.18 -2.0 35,984 - GFF6458 0.18 -1.4 35,984 - GFF6458 0.18 -1.7 36,091 + GFF6458 0.33 -1.5 36,091 + GFF6458 0.33 +1.3 36,092 - GFF6458 0.33 +0.5 36,092 - GFF6458 0.33 -0.0 36,092 - GFF6458 0.33 +2.2 36,092 - GFF6458 0.33 -1.0 36,092 - GFF6458 0.33 -0.7 36,103 + GFF6458 0.35 -1.0 36,103 + GFF6458 0.35 +2.0 36,103 + GFF6458 0.35 +0.9 36,103 + GFF6458 0.35 -1.8 36,103 + GFF6458 0.35 +1.0 36,104 - GFF6458 0.35 -0.3 36,104 - GFF6458 0.35 -1.0 36,104 - GFF6458 0.35 -1.0 36,104 - GFF6458 0.35 +1.3 36,104 - GFF6458 0.35 -2.8 36,187 + GFF6458 0.47 +0.1 36,187 + GFF6458 0.47 -1.6 36,188 - GFF6458 0.47 -0.3 36,188 - GFF6458 0.47 -0.9 36,188 - GFF6458 0.47 -1.3 36,398 + GFF6458 0.76 -0.6 36,399 - GFF6458 0.77 -2.5 36,435 + GFF6458 0.82 -2.0 36,436 - GFF6458 0.82 +1.1 36,654 - -0.3 36,654 - +1.2 36,654 - +2.0 36,675 + -0.1 36,676 - -1.3 36,713 + +0.3 36,713 + -1.0 36,713 + +0.1 36,714 - +1.0 36,760 + +0.2 36,760 + -2.7 36,761 - -1.1 36,838 + GFF6459 0.20 +1.0 36,997 + GFF6459 0.43 +0.4 36,998 - GFF6459 0.43 +0.2 36,998 - GFF6459 0.43 +0.2 37,012 + GFF6459 0.45 -1.0 37,012 + GFF6459 0.45 +1.1 37,013 - GFF6459 0.45 +1.0 37,013 - GFF6459 0.45 -2.0 37,240 + GFF6459 0.79 -0.0 37,240 + GFF6459 0.79 -0.8 37,346 - -1.5 37,494 + -2.8 37,495 - -3.4
Or see this region's nucleotide sequence