Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6436 and GFF6437 are separated by 2 nucleotides GFF6437 and GFF6438 are separated by 11 nucleotides GFF6438 and GFF6439 are separated by 153 nucleotides
GFF6436 - hypothetical protein, at 14,420 to 14,794
GFF6436
GFF6437 - no description, at 14,797 to 15,510
GFF6437
GFF6438 - hypothetical protein, at 15,522 to 15,938
GFF6438
GFF6439 - Transcriptional regulator, LysR family, at 16,092 to 17,009
GFF6439
Position (kb) 15
16 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 14.577 kb on + strand, within GFF6436 at 14.798 kb on + strand at 14.798 kb on + strand at 14.798 kb on + strand at 14.798 kb on + strand at 14.798 kb on + strand at 14.798 kb on + strand at 14.799 kb on - strand at 15.173 kb on + strand, within GFF6437 at 15.174 kb on - strand, within GFF6437 at 15.293 kb on + strand, within GFF6437 at 15.293 kb on + strand, within GFF6437 at 15.293 kb on + strand, within GFF6437 at 15.294 kb on - strand, within GFF6437 at 15.294 kb on - strand, within GFF6437 at 15.420 kb on - strand, within GFF6437 at 15.420 kb on - strand, within GFF6437 at 15.420 kb on - strand, within GFF6437 at 15.420 kb on - strand, within GFF6437 at 15.420 kb on - strand, within GFF6437 at 15.420 kb on - strand, within GFF6437 at 15.420 kb on - strand, within GFF6437 at 15.523 kb on + strand at 15.524 kb on - strand at 15.524 kb on - strand at 15.640 kb on + strand, within GFF6438 at 15.640 kb on + strand, within GFF6438 at 15.640 kb on + strand, within GFF6438 at 15.640 kb on + strand, within GFF6438 at 15.641 kb on - strand, within GFF6438 at 15.641 kb on - strand, within GFF6438 at 15.754 kb on + strand, within GFF6438 at 15.755 kb on - strand, within GFF6438 at 15.755 kb on - strand, within GFF6438 at 15.938 kb on + strand at 15.938 kb on + strand at 15.938 kb on + strand at 15.938 kb on + strand at 15.938 kb on + strand at 15.938 kb on + strand at 15.939 kb on - strand at 15.939 kb on - strand at 15.939 kb on - strand at 15.939 kb on - strand at 15.939 kb on - strand at 15.939 kb on - strand at 15.948 kb on + strand at 15.948 kb on + strand at 15.948 kb on + strand at 15.995 kb on + strand at 15.998 kb on - strand at 15.998 kb on - strand at 15.999 kb on - strand at 16.012 kb on - strand at 16.012 kb on - strand at 16.012 kb on - strand at 16.372 kb on - strand, within GFF6439 at 16.576 kb on - strand, within GFF6439
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 14,577 + GFF6436 0.42 -1.5 14,798 + -0.3 14,798 + -0.8 14,798 + +1.6 14,798 + -1.9 14,798 + -0.2 14,798 + -2.0 14,799 - -1.7 15,173 + GFF6437 0.53 -1.3 15,174 - GFF6437 0.53 +3.5 15,293 + GFF6437 0.69 +0.3 15,293 + GFF6437 0.69 -0.1 15,293 + GFF6437 0.69 -1.0 15,294 - GFF6437 0.70 -0.8 15,294 - GFF6437 0.70 -2.6 15,420 - GFF6437 0.87 -1.0 15,420 - GFF6437 0.87 -1.8 15,420 - GFF6437 0.87 -3.2 15,420 - GFF6437 0.87 -1.2 15,420 - GFF6437 0.87 -0.8 15,420 - GFF6437 0.87 -0.3 15,420 - GFF6437 0.87 -1.3 15,523 + -0.6 15,524 - +0.9 15,524 - -0.6 15,640 + GFF6438 0.28 -1.2 15,640 + GFF6438 0.28 -2.0 15,640 + GFF6438 0.28 -0.9 15,640 + GFF6438 0.28 -1.9 15,641 - GFF6438 0.29 -0.1 15,641 - GFF6438 0.29 +0.7 15,754 + GFF6438 0.56 +0.5 15,755 - GFF6438 0.56 +0.1 15,755 - GFF6438 0.56 -1.6 15,938 + -3.1 15,938 + +0.1 15,938 + -2.4 15,938 + +0.5 15,938 + -0.5 15,938 + -0.9 15,939 - +2.3 15,939 - -1.2 15,939 - -2.2 15,939 - +0.5 15,939 - +0.2 15,939 - -0.0 15,948 + -1.5 15,948 + +0.2 15,948 + -1.9 15,995 + -1.1 15,998 - +1.4 15,998 - -0.8 15,999 - -1.2 16,012 - -2.9 16,012 - -1.5 16,012 - +2.6 16,372 - GFF6439 0.31 -1.7 16,576 - GFF6439 0.53 -2.9
Or see this region's nucleotide sequence