Strain Fitness in Variovorax sp. SCN45 around GFF6420

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
94,062	+		GFF6419	0.32	+1.5
94,062	+		GFF6419	0.32	-2.5
94,062	+		GFF6419	0.32	+1.0
94,062	+		GFF6419	0.32	-1.7
94,062	+		GFF6419	0.32	-0.0
94,062	+		GFF6419	0.32	-3.7
94,062	+		GFF6419	0.32	-1.1
94,062	+		GFF6419	0.32	+3.0
94,062	+		GFF6419	0.32	-1.8
94,062	+		GFF6419	0.32	+1.4
94,062	+		GFF6419	0.32	-0.6
94,062	+		GFF6419	0.32	+0.6
94,062	+		GFF6419	0.32	+0.3
94,062	+		GFF6419	0.32	-2.2
94,062	+		GFF6419	0.32	-0.5
94,063	-		GFF6419	0.32	+1.3
94,063	-		GFF6419	0.32	-1.6
94,063	-		GFF6419	0.32	-1.2
94,063	-		GFF6419	0.32	+0.3
94,063	-		GFF6419	0.32	-1.6
94,063	-		GFF6419	0.32	+0.0
94,063	-		GFF6419	0.32	-1.5
94,063	-		GFF6419	0.32	-1.4
94,063	-		GFF6419	0.32	-1.8
94,063	-		GFF6419	0.32	-0.3
94,063	-		GFF6419	0.32	-1.5
94,063	-		GFF6419	0.32	-0.7
94,063	-		GFF6419	0.32	-0.9
94,063	-		GFF6419	0.32	-0.9
94,224	+		GFF6419	0.45	-0.0
94,224	+		GFF6419	0.45	+0.0
94,224	+		GFF6419	0.45	+1.3
94,224	+		GFF6419	0.45	-2.4
94,224	+		GFF6419	0.45	+0.5
94,224	+		GFF6419	0.45	-2.6
94,224	+		GFF6419	0.45	-0.2
94,224	+		GFF6419	0.45	-0.3
94,224	+		GFF6419	0.45	-1.6
94,224	+		GFF6419	0.45	+0.5
94,225	-		GFF6419	0.45	-0.8
94,225	-		GFF6419	0.45	-3.5
94,225	-		GFF6419	0.45	-2.5
94,225	-		GFF6419	0.45	-0.6
94,225	-		GFF6419	0.45	-0.4
94,225	-		GFF6419	0.45	+0.5
94,225	-		GFF6419	0.45	-1.2
94,225	-		GFF6419	0.45	-0.0
94,225	-		GFF6419	0.45	-1.5
94,225	-		GFF6419	0.45	+0.5
94,225	-		GFF6419	0.45	+0.7
94,458	+		GFF6419	0.65	-3.3
94,459	-		GFF6419	0.65	+0.7
94,459	-		GFF6419	0.65	+0.9
94,459	-		GFF6419	0.65	+0.8
94,506	+		GFF6419	0.69	+1.0
94,506	+		GFF6419	0.69	-1.9
94,506	+		GFF6419	0.69	-0.3
94,506	+		GFF6419	0.69	-2.4
94,506	+		GFF6419	0.69	+0.3
94,506	+		GFF6419	0.69	-0.9
94,506	+		GFF6419	0.69	-0.0
94,506	+		GFF6419	0.69	-0.5
94,506	+		GFF6419	0.69	+0.2
94,506	+		GFF6419	0.69	-2.4
94,506	+		GFF6419	0.69	-0.3
94,506	+		GFF6419	0.69	-0.6
94,506	+		GFF6419	0.69	-0.3
94,506	+		GFF6419	0.69	-0.6
94,506	+		GFF6419	0.69	+3.1
94,506	+		GFF6419	0.69	-0.1
94,506	+		GFF6419	0.69	-0.5
94,507	-		GFF6419	0.69	-0.5
94,507	-		GFF6419	0.69	+1.5
94,507	-		GFF6419	0.69	-1.5
94,507	-		GFF6419	0.69	-0.4
94,507	-		GFF6419	0.69	-0.7
94,507	-		GFF6419	0.69	+1.0
94,507	-		GFF6419	0.69	-0.2
94,507	-		GFF6419	0.69	-0.6
94,507	-		GFF6419	0.69	+1.5
94,507	-		GFF6419	0.69	+1.9
94,507	-		GFF6419	0.69	+1.1
94,507	-		GFF6419	0.69	+0.5
94,507	-		GFF6419	0.69	-1.0
94,507	-		GFF6419	0.69	-1.4
94,507	-		GFF6419	0.69	+1.0
94,507	-		GFF6419	0.69	+0.6
94,524	+		GFF6419	0.71	-0.9
94,524	+		GFF6419	0.71	-2.2
94,525	-		GFF6419	0.71	-2.7
94,525	-		GFF6419	0.71	-0.5
94,525	-		GFF6419	0.71	+1.2
94,539	+		GFF6419	0.72	-0.2
94,539	+		GFF6419	0.72	-1.9
94,539	+		GFF6419	0.72	-0.1
94,539	+		GFF6419	0.72	-1.0
94,540	-		GFF6419	0.72	+0.2
94,540	-		GFF6419	0.72	+2.0
94,540	-		GFF6419	0.72	-2.4
94,716	+		GFF6419	0.87	-1.5
94,716	+		GFF6419	0.87	-2.7
94,716	+		GFF6419	0.87	+1.0
94,716	+		GFF6419	0.87	-0.4
94,716	+		GFF6419	0.87	-0.0
94,716	+		GFF6419	0.87	+1.5
94,716	+		GFF6419	0.87	-1.2
94,717	-		GFF6419	0.87	-0.3
94,717	-		GFF6419	0.87	+1.6
94,717	-		GFF6419	0.87	-1.7
94,717	-		GFF6419	0.87	-1.3
94,717	-		GFF6419	0.87	+2.1
94,717	-		GFF6419	0.87	+0.5
94,717	-		GFF6419	0.87	-1.1
94,717	-		GFF6419	0.87	-1.1
94,717	-		GFF6419	0.87	+1.6
94,717	-		GFF6419	0.87	-1.6
94,717	-		GFF6419	0.87	+1.6
94,827	-				+0.0
94,883	-				-0.5
94,883	-				+0.8
94,883	-				-0.5
94,883	-				-1.7
94,915	+				+0.2
94,915	+				+2.0
94,915	+				-2.0
94,915	+				-0.9
94,916	-				+2.5
94,916	-				+1.0
94,916	-				+2.3
94,916	-				-2.6
94,960	-				-1.2
94,960	-				-0.5
94,996	+				-0.7
95,238	+		GFF6420	0.13	+0.6
95,238	+		GFF6420	0.13	-1.3
95,238	+		GFF6420	0.13	-2.4
95,238	+		GFF6420	0.13	+1.1
95,239	-		GFF6420	0.13	+0.5
95,239	-		GFF6420	0.13	-0.6
95,239	-		GFF6420	0.13	+0.6
95,239	-		GFF6420	0.13	+2.9
95,239	-		GFF6420	0.13	-0.3
95,280	+		GFF6420	0.16	+2.6
95,281	-		GFF6420	0.16	+0.5
95,281	-		GFF6420	0.16	-2.0
95,328	+		GFF6420	0.18	-0.6
95,328	+		GFF6420	0.18	-0.3
95,328	+		GFF6420	0.18	-2.3
95,328	+		GFF6420	0.18	-2.4
95,328	+		GFF6420	0.18	+0.2
95,328	+		GFF6420	0.18	+1.3
95,328	+		GFF6420	0.18	+0.5
95,328	+		GFF6420	0.18	-0.0
95,328	+		GFF6420	0.18	-0.2
95,328	+		GFF6420	0.18	-0.5
95,328	+		GFF6420	0.18	+1.2
95,328	+		GFF6420	0.18	+0.5
95,328	+		GFF6420	0.18	-0.3
95,329	-		GFF6420	0.19	-1.4
95,329	-		GFF6420	0.19	+1.7
95,329	-		GFF6420	0.19	-0.7
95,329	-		GFF6420	0.19	-0.3
95,329	-		GFF6420	0.19	-0.2
95,329	-		GFF6420	0.19	-2.7
95,329	-		GFF6420	0.19	-1.5
95,329	-		GFF6420	0.19	-0.9
95,329	-		GFF6420	0.19	-0.8
95,329	-		GFF6420	0.19	+0.0
95,329	-		GFF6420	0.19	-1.0
95,329	-		GFF6420	0.19	-1.7
95,329	-		GFF6420	0.19	-1.7
95,355	+		GFF6420	0.20	+0.8
95,355	+		GFF6420	0.20	-2.0
95,355	+		GFF6420	0.20	-1.6
95,356	-		GFF6420	0.20	+0.7
95,356	-		GFF6420	0.20	-0.9
95,364	+		GFF6420	0.21	-0.2
95,529	+		GFF6420	0.31	+1.5
95,529	+		GFF6420	0.31	+2.3
95,529	+		GFF6420	0.31	-1.7
95,530	-		GFF6420	0.31	+1.5
95,530	-		GFF6420	0.31	+1.7
95,530	-		GFF6420	0.31	+0.7
95,530	-		GFF6420	0.31	+0.5
95,530	-		GFF6420	0.31	-1.5
95,530	-		GFF6420	0.31	+0.2
95,530	-		GFF6420	0.31	-0.7
95,583	+		GFF6420	0.34	+0.2
95,637	+		GFF6420	0.38	-0.2
95,637	+		GFF6420	0.38	+1.3
95,637	+		GFF6420	0.38	-0.5
95,637	+		GFF6420	0.38	-0.6
95,637	+		GFF6420	0.38	-3.2
95,637	+		GFF6420	0.38	-1.9
95,637	+		GFF6420	0.38	-1.3
95,637	+		GFF6420	0.38	-2.5
95,637	+		GFF6420	0.38	-0.9
95,637	+		GFF6420	0.38	+0.3
95,638	-		GFF6420	0.38	-0.5
95,638	-		GFF6420	0.38	-2.0
95,638	-		GFF6420	0.38	-1.1
95,638	-		GFF6420	0.38	-0.8
95,638	-		GFF6420	0.38	+0.1
95,638	-		GFF6420	0.38	-0.8
95,638	-		GFF6420	0.38	+0.1
95,638	-		GFF6420	0.38	+1.0
95,638	-		GFF6420	0.38	-1.5
95,638	-		GFF6420	0.38	+1.2
95,638	-		GFF6420	0.38	+0.3
95,638	-		GFF6420	0.38	-1.5
95,638	-		GFF6420	0.38	+0.9
95,638	-		GFF6420	0.38	+0.4
95,638	-		GFF6420	0.38	-1.1
95,638	-		GFF6420	0.38	-2.5
95,638	-		GFF6420	0.38	-0.5
95,638	-		GFF6420	0.38	+1.5
95,638	-		GFF6420	0.38	-3.0
95,638	-		GFF6420	0.38	+0.5
95,679	+		GFF6420	0.40	-0.2
95,679	+		GFF6420	0.40	-1.1
95,679	+		GFF6420	0.40	-1.9
95,679	+		GFF6420	0.40	-1.8
95,679	+		GFF6420	0.40	-2.3
95,679	+		GFF6420	0.40	+2.2
95,679	+		GFF6420	0.40	-0.5
95,680	-		GFF6420	0.40	-0.0
95,680	-		GFF6420	0.40	-2.2
95,680	-		GFF6420	0.40	-0.3
95,680	-		GFF6420	0.40	+1.1
95,680	-		GFF6420	0.40	+0.2
95,680	-		GFF6420	0.40	-0.8
95,680	-		GFF6420	0.40	-0.3
95,790	+		GFF6420	0.47	+2.1
95,790	+		GFF6420	0.47	+2.9
95,790	+		GFF6420	0.47	+2.2
95,790	+		GFF6420	0.47	+0.1
95,790	+		GFF6420	0.47	-3.4
95,790	+		GFF6420	0.47	-0.8
95,790	+		GFF6420	0.47	-1.5
95,790	+		GFF6420	0.47	+0.4
95,790	+		GFF6420	0.47	+0.5
95,790	+		GFF6420	0.47	+0.0
95,790	+		GFF6420	0.47	-0.8
95,790	+		GFF6420	0.47	+1.0
95,790	+		GFF6420	0.47	-0.3
95,790	+		GFF6420	0.47	+0.5
95,790	+		GFF6420	0.47	-0.2
95,790	+		GFF6420	0.47	+0.5
95,790	+		GFF6420	0.47	-0.6
95,790	+		GFF6420	0.47	-0.3
95,790	+		GFF6420	0.47	-0.3
95,790	+		GFF6420	0.47	-0.0
95,791	-		GFF6420	0.47	+0.1
95,791	-		GFF6420	0.47	-1.6
95,791	-		GFF6420	0.47	+0.0
95,791	-		GFF6420	0.47	+0.0
95,791	-		GFF6420	0.47	-1.1
95,791	-		GFF6420	0.47	-0.9
95,791	-		GFF6420	0.47	+0.2
95,791	-		GFF6420	0.47	-2.2
95,791	-		GFF6420	0.47	-2.3
95,791	-		GFF6420	0.47	+1.6
95,791	-		GFF6420	0.47	-1.1
95,791	-		GFF6420	0.47	-1.0
95,791	-		GFF6420	0.47	-1.5
95,791	-		GFF6420	0.47	+0.3
95,791	-		GFF6420	0.47	-1.2
95,791	-		GFF6420	0.47	-0.5
95,791	-		GFF6420	0.47	+1.4
95,791	-		GFF6420	0.47	+0.5
95,791	-		GFF6420	0.47	+0.6
95,791	-		GFF6420	0.47	-0.0
95,791	-		GFF6420	0.47	-1.0
95,791	-		GFF6420	0.47	+0.5
95,791	-		GFF6420	0.47	-2.3
95,791	-		GFF6420	0.47	-0.9
95,875	-		GFF6420	0.52	+1.3
95,875	-		GFF6420	0.52	-3.5
95,875	-		GFF6420	0.52	+0.5
95,875	-		GFF6420	0.52	+0.5
95,875	-		GFF6420	0.52	-2.8
96,125	+		GFF6420	0.68	-1.3
96,126	+		GFF6420	0.68	-0.6
96,126	+		GFF6420	0.68	-0.3
96,126	+		GFF6420	0.68	-2.3
96,127	-		GFF6420	0.68	+0.4
96,127	-		GFF6420	0.68	-0.5
96,127	-		GFF6420	0.68	+0.5
96,162	+		GFF6420	0.70	+2.2
96,162	+		GFF6420	0.70	-3.5
96,162	+		GFF6420	0.70	-0.4
96,163	-		GFF6420	0.70	-0.6
96,177	+		GFF6420	0.71	+1.2
96,177	+		GFF6420	0.71	-2.3
96,177	+		GFF6420	0.71	-0.1
96,178	-		GFF6420	0.71	-2.9
96,178	-		GFF6420	0.71	+0.0
96,178	-		GFF6420	0.71	-1.3
96,178	-		GFF6420	0.71	-1.2
96,178	-		GFF6420	0.71	-2.5
96,264	+		GFF6420	0.77	-2.6
96,265	-		GFF6420	0.77	+0.5
96,265	-		GFF6420	0.77	-0.5
96,265	-		GFF6420	0.77	-0.6
96,265	-		GFF6420	0.77	+0.5
96,300	+		GFF6420	0.79	+1.6
96,309	+		GFF6420	0.79	+1.0
96,309	+		GFF6420	0.79	-1.0
96,309	+		GFF6420	0.79	-1.4
96,309	+		GFF6420	0.79	-2.7
96,309	+		GFF6420	0.79	+1.0
96,309	+		GFF6420	0.79	+0.3
96,309	+		GFF6420	0.79	-0.5
96,309	+		GFF6420	0.79	+0.5
96,309	+		GFF6420	0.79	-1.3
96,309	+		GFF6420	0.79	-0.2
96,309	+		GFF6420	0.79	-2.7
96,309	+		GFF6420	0.79	-2.1
96,309	+		GFF6420	0.79	-1.9
96,309	+		GFF6420	0.79	-1.4
96,309	+		GFF6420	0.79	-1.0
96,309	+		GFF6420	0.79	+0.1
96,309	+		GFF6420	0.79	+0.3
96,309	+		GFF6420	0.79	-0.5
96,309	+		GFF6420	0.79	+0.5
96,309	+		GFF6420	0.79	+1.0
96,309	+		GFF6420	0.79	+1.5
96,309	+		GFF6420	0.79	+0.5
96,309	+		GFF6420	0.79	+0.3
96,310	-		GFF6420	0.79	+0.6
96,310	-		GFF6420	0.79	-0.1
96,310	-		GFF6420	0.79	-3.0
96,310	-		GFF6420	0.79	-1.4
96,310	-		GFF6420	0.79	-0.3
96,310	-		GFF6420	0.79	-1.0
96,310	-		GFF6420	0.79	-0.3
96,310	-		GFF6420	0.79	+0.1
96,310	-		GFF6420	0.79	+0.7
96,310	-		GFF6420	0.79	+0.1
96,310	-		GFF6420	0.79	+2.5
96,310	-		GFF6420	0.79	-0.7
96,310	-		GFF6420	0.79	-1.9
96,310	-		GFF6420	0.79	+0.1
96,310	-		GFF6420	0.79	-2.2
96,310	-		GFF6420	0.79	-0.9
96,310	-		GFF6420	0.79	+1.4
96,310	-		GFF6420	0.79	-1.6
96,310	-		GFF6420	0.79	-1.2
96,310	-		GFF6420	0.79	-0.9
96,310	-		GFF6420	0.79	-0.0
96,310	-		GFF6420	0.79	+0.9
96,310	-		GFF6420	0.79	+0.2
96,760	+				+1.2
96,760	+				+3.3
96,760	+				-1.6
96,761	-				-1.6
96,761	-				-0.5
96,866	+				-1.9
96,866	+				-1.6
96,866	+				-0.9
96,866	+				+0.4
96,866	+				-1.9
96,866	+				+2.5
96,866	+				-1.2
96,867	-				-1.4
96,867	-				-0.8
96,867	-				+0.0
96,867	-				-0.1
96,867	-				-2.5
96,868	+				-2.4
97,150	+		GFF6421	0.17	-3.2
97,150	+		GFF6421	0.17	-2.7
97,150	+		GFF6421	0.17	-1.5
97,150	+		GFF6421	0.17	-0.8
97,150	+		GFF6421	0.17	-1.2
97,150	+		GFF6421	0.17	-1.9
97,151	-		GFF6421	0.17	-0.3
97,151	-		GFF6421	0.17	+0.2
97,151	-		GFF6421	0.17	-1.6
97,151	-		GFF6421	0.17	-1.7
97,151	-		GFF6421	0.17	-2.2
97,151	-		GFF6421	0.17	-0.5
97,151	-		GFF6421	0.17	-2.5
97,151	-		GFF6421	0.17	-2.2
97,151	-		GFF6421	0.17	-1.0
97,273	+		GFF6421	0.22	-3.4
97,273	+		GFF6421	0.22	-2.2
97,273	+		GFF6421	0.22	-1.6
97,273	+		GFF6421	0.22	-2.3
97,273	+		GFF6421	0.22	-1.0
97,273	+		GFF6421	0.22	-0.7
97,273	+		GFF6421	0.22	-1.5
97,273	+		GFF6421	0.22	-1.8
97,273	+		GFF6421	0.22	+0.2
97,273	+		GFF6421	0.22	-2.5
97,273	+		GFF6421	0.22	-2.0
97,273	+		GFF6421	0.22	-2.8
97,273	+		GFF6421	0.22	-0.9
97,273	+		GFF6421	0.22	-2.5
97,273	+		GFF6421	0.22	-0.5
97,273	+		GFF6421	0.22	+2.5
97,273	+		GFF6421	0.22	+0.2
97,273	+		GFF6421	0.22	+0.1
97,273	+		GFF6421	0.22	-1.0
97,273	+		GFF6421	0.22	-0.5
97,273	+		GFF6421	0.22	+1.5
97,273	+		GFF6421	0.22	-0.5
97,274	-		GFF6421	0.22	+1.0
97,274	-		GFF6421	0.22	+1.1
97,274	-		GFF6421	0.22	-0.8
97,274	-		GFF6421	0.22	-3.3
97,274	-		GFF6421	0.22	-0.4
97,274	-		GFF6421	0.22	-0.7
97,274	-		GFF6421	0.22	+0.0
97,274	-		GFF6421	0.22	+0.8
97,375	+		GFF6421	0.26	-1.8
97,375	+		GFF6421	0.26	-1.2
97,376	-		GFF6421	0.27	-2.2
97,376	-		GFF6421	0.27	+1.5
97,376	-		GFF6421	0.27	+2.5
97,376	-		GFF6421	0.27	-0.1
97,376	-		GFF6421	0.27	+2.0
97,376	-		GFF6421	0.27	+0.6
97,468	+		GFF6421	0.30	+0.8
97,468	+		GFF6421	0.30	-2.0
97,468	+		GFF6421	0.30	-3.1
97,468	+		GFF6421	0.30	-3.1
97,468	+		GFF6421	0.30	+1.5
97,468	+		GFF6421	0.30	-0.8
97,468	+		GFF6421	0.30	-1.0
97,468	+		GFF6421	0.30	-1.6
97,468	+		GFF6421	0.30	-2.3
97,469	-		GFF6421	0.31	-2.0
97,469	-		GFF6421	0.31	-1.7
97,469	-		GFF6421	0.31	-0.5
97,469	-		GFF6421	0.31	+0.1
97,469	-		GFF6421	0.31	+0.5
97,469	-		GFF6421	0.31	-3.6
97,469	-		GFF6421	0.31	-0.5
97,469	-		GFF6421	0.31	+1.5
97,469	-		GFF6421	0.31	+2.5
97,469	-		GFF6421	0.31	-2.4