Strain Fitness in Variovorax sp. SCN45 around GFF6409

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
82,747	+		GFF6408	0.50	-1.4
82,748	-		GFF6408	0.50	-0.7
82,948	+		GFF6408	0.61	+0.5
82,948	+		GFF6408	0.61	-1.5
82,948	+		GFF6408	0.61	-2.4
82,949	-		GFF6408	0.61	-2.5
83,097	-		GFF6408	0.70	-1.8
83,098	+		GFF6408	0.70	-1.1
83,098	+		GFF6408	0.70	-0.5
83,098	+		GFF6408	0.70	+0.5
83,098	+		GFF6408	0.70	-1.0
83,098	+		GFF6408	0.70	-1.2
83,098	+		GFF6408	0.70	-1.3
83,099	-		GFF6408	0.70	+1.1
83,099	-		GFF6408	0.70	-0.8
83,099	-		GFF6408	0.70	+1.5
83,099	-		GFF6408	0.70	-0.8
83,164	+		GFF6408	0.74	+0.1
83,164	+		GFF6408	0.74	-0.3
83,164	+		GFF6408	0.74	+1.0
83,164	+		GFF6408	0.74	-2.5
83,164	+		GFF6408	0.74	+3.3
83,164	+		GFF6408	0.74	+1.1
83,164	+		GFF6408	0.74	-0.9
83,165	-		GFF6408	0.74	-0.5
83,165	-		GFF6408	0.74	-0.7
83,165	-		GFF6408	0.74	-0.2
83,165	-		GFF6408	0.74	-3.2
83,165	-		GFF6408	0.74	-2.0
83,165	-		GFF6408	0.74	-0.2
83,165	-		GFF6408	0.74	+1.1
83,194	+		GFF6408	0.75	-2.5
83,194	+		GFF6408	0.75	+1.1
83,195	-		GFF6408	0.75	-0.2
83,195	-		GFF6408	0.75	-1.5
83,386	+		GFF6408	0.87	+1.5
83,386	+		GFF6408	0.87	-1.2
83,386	+		GFF6408	0.87	-2.4
83,386	+		GFF6408	0.87	+3.0
83,387	-		GFF6408	0.87	+0.8
83,387	-		GFF6408	0.87	-0.3
83,387	-		GFF6408	0.87	+2.5
83,425	+		GFF6408	0.89	-1.2
83,603	+				+2.7
83,603	+				-1.7
83,604	-				-1.0
83,604	-				+1.5
83,605	+				-2.3
83,606	-				-1.7
83,632	+				-1.7
83,632	+				+2.3
83,632	+				+0.5
83,632	+				+1.4
83,633	-				-0.0
83,633	-				-1.6
83,633	-				-1.0
83,651	-				-2.7
83,740	+				-1.9
83,740	+				-1.2
83,741	-				-1.4
84,209	+		GFF6409	0.36	-0.1
84,209	+		GFF6409	0.36	+0.7
84,209	+		GFF6409	0.36	+0.6
84,210	-		GFF6409	0.36	-0.3
84,210	-		GFF6409	0.36	-1.6
84,210	-		GFF6409	0.36	+3.0
84,579	+		GFF6409	0.60	+1.0
85,021	+		GFF6409	0.88	+0.2
85,221	-				-0.1
85,221	-				+0.5
85,222	+				+1.8
85,223	-				-0.8
85,223	-				-1.3
85,223	-				+0.3
85,246	+				+0.5
85,246	+				+1.2
85,246	+				+0.2
85,246	+				-0.3
85,247	-				+0.6
85,247	-				-2.4
85,247	-				+0.5
85,247	-				+0.6
85,271	+				-0.9
85,298	+				-0.0
85,319	+				-2.3
85,319	+				+0.6
85,320	-				-1.9
85,450	+		GFF6410	0.24	-2.3
85,450	+		GFF6410	0.24	+0.1
85,502	+		GFF6410	0.31	+2.8
85,502	+		GFF6410	0.31	-1.3
85,502	+		GFF6410	0.31	+0.8
85,502	+		GFF6410	0.31	-0.9
85,502	+		GFF6410	0.31	+1.4
85,503	-		GFF6410	0.32	-0.1
85,503	-		GFF6410	0.32	-0.3
85,503	-		GFF6410	0.32	-2.4
85,503	-		GFF6410	0.32	-2.0
85,503	-		GFF6410	0.32	-0.9
85,541	+		GFF6410	0.37	-3.8
85,541	+		GFF6410	0.37	+2.8
85,542	-		GFF6410	0.37	-1.5
85,568	+		GFF6410	0.40	+1.0
85,568	+		GFF6410	0.40	+1.8
85,568	+		GFF6410	0.40	-1.7
85,568	+		GFF6410	0.40	-2.3
85,569	-		GFF6410	0.41	-1.0
85,569	-		GFF6410	0.41	-1.9
85,569	-		GFF6410	0.41	-0.6
85,569	-		GFF6410	0.41	-3.1
85,712	+		GFF6410	0.60	+0.1
85,712	+		GFF6410	0.60	-0.9
85,712	+		GFF6410	0.60	-1.0
85,713	-		GFF6410	0.60	-1.9
85,976	+				+1.0
86,110	+		GFF6411	0.12	-1.7
86,110	+		GFF6411	0.12	+0.2
86,110	+		GFF6411	0.12	-3.3
86,110	+		GFF6411	0.12	+1.5
86,110	+		GFF6411	0.12	+0.5
86,111	-		GFF6411	0.12	+0.1
86,111	-		GFF6411	0.12	-0.3
86,111	-		GFF6411	0.12	-0.0
86,111	-		GFF6411	0.12	-0.9
86,111	-		GFF6411	0.12	-1.3
86,111	-		GFF6411	0.12	+0.5