Strain Fitness in Variovorax sp. SCN45 around GFF6323

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
113,759	+		GFF6322	0.69	-1.2
113,759	+		GFF6322	0.69	-1.2
113,759	+		GFF6322	0.69	-3.0
113,759	+		GFF6322	0.69	-1.4
113,759	+		GFF6322	0.69	-1.4
113,759	+		GFF6322	0.69	-0.7
113,759	+		GFF6322	0.69	+0.4
113,759	+		GFF6322	0.69	-1.6
113,760	-		GFF6322	0.70	-3.7
113,760	-		GFF6322	0.70	-1.5
113,760	-		GFF6322	0.70	-2.7
113,760	-		GFF6322	0.70	-1.7
113,760	-		GFF6322	0.70	-3.7
113,760	-		GFF6322	0.70	-0.4
113,760	-		GFF6322	0.70	-1.6
113,760	-		GFF6322	0.70	-1.5
113,760	-		GFF6322	0.70	-2.2
113,760	-		GFF6322	0.70	-3.1
113,760	-		GFF6322	0.70	+0.4
113,760	-		GFF6322	0.70	-3.2
113,760	-		GFF6322	0.70	-1.0
113,760	-		GFF6322	0.70	-0.9
113,765	+		GFF6322	0.70	-0.7
113,765	+		GFF6322	0.70	-0.7
113,765	+		GFF6322	0.70	-2.0
113,765	+		GFF6322	0.70	-2.1
113,765	+		GFF6322	0.70	-2.7
113,765	+		GFF6322	0.70	-1.4
113,765	+		GFF6322	0.70	-2.5
113,765	+		GFF6322	0.70	-1.7
113,765	+		GFF6322	0.70	-1.5
113,765	+		GFF6322	0.70	-0.4
113,765	+		GFF6322	0.70	-3.7
113,765	+		GFF6322	0.70	-2.0
113,765	+		GFF6322	0.70	-1.9
113,765	+		GFF6322	0.70	-2.2
113,765	+		GFF6322	0.70	-1.1
113,765	+		GFF6322	0.70	-2.3
113,765	+		GFF6322	0.70	-3.9
113,765	+		GFF6322	0.70	-0.6
113,765	+		GFF6322	0.70	-1.7
113,765	+		GFF6322	0.70	-3.5
113,765	+		GFF6322	0.70	-2.6
113,766	-		GFF6322	0.70	-2.3
113,766	-		GFF6322	0.70	-4.6
113,766	-		GFF6322	0.70	-2.0
113,766	-		GFF6322	0.70	-3.8
113,766	-		GFF6322	0.70	-0.6
113,766	-		GFF6322	0.70	-1.2
113,766	-		GFF6322	0.70	-4.6
113,766	-		GFF6322	0.70	-2.5
113,766	-		GFF6322	0.70	-1.8
113,766	-		GFF6322	0.70	-2.4
113,766	-		GFF6322	0.70	+0.1
113,766	-		GFF6322	0.70	+0.1
113,766	-		GFF6322	0.70	-2.0
113,766	-		GFF6322	0.70	-1.3
113,766	-		GFF6322	0.70	-1.7
113,849	+		GFF6322	0.79	-2.7
114,002	+				-0.2
114,002	+				+0.1
114,002	+				-1.5
114,002	+				-4.0
114,002	+				-0.4
114,002	+				-1.2
114,002	+				-2.1
114,002	+				-2.1
114,002	+				-1.4
114,002	+				-3.3
114,003	-				+0.4
114,003	-				-0.4
114,003	-				-2.3
114,003	-				-0.7
114,003	-				-0.6
114,003	-				+0.1
114,003	-				-2.7
114,003	-				-2.3
114,430	+		GFF6323	0.30	+2.2
114,430	+		GFF6323	0.30	-1.7
114,430	+		GFF6323	0.30	-1.2
114,430	+		GFF6323	0.30	+0.7
114,430	+		GFF6323	0.30	-1.6
114,430	+		GFF6323	0.30	+0.5
114,430	+		GFF6323	0.30	-1.2
114,430	+		GFF6323	0.30	+1.5
114,430	+		GFF6323	0.30	-1.6
114,431	-		GFF6323	0.30	-0.3
114,431	-		GFF6323	0.30	-0.9
114,431	-		GFF6323	0.30	+1.4
114,431	-		GFF6323	0.30	-3.0
114,431	-		GFF6323	0.30	-0.9
114,431	-		GFF6323	0.30	+1.4
114,431	-		GFF6323	0.30	+2.4
114,431	-		GFF6323	0.30	+3.5
114,460	+		GFF6323	0.32	-1.8
114,610	+		GFF6323	0.44	+0.7
114,663	+		GFF6323	0.48	+0.5
114,664	-		GFF6323	0.48	-2.0
114,664	-		GFF6323	0.48	-0.7
114,787	+		GFF6323	0.58	-2.6
114,787	+		GFF6323	0.58	-2.4
114,788	-		GFF6323	0.58	+0.3
114,788	-		GFF6323	0.58	-1.0
114,788	-		GFF6323	0.58	-2.2
114,788	-		GFF6323	0.58	-0.1
114,788	-		GFF6323	0.58	+1.2
114,823	+		GFF6323	0.60	+2.6
114,823	+		GFF6323	0.60	-0.3
114,823	+		GFF6323	0.60	-0.2
114,823	+		GFF6323	0.60	-0.3
114,824	-		GFF6323	0.60	-0.6
114,853	+		GFF6323	0.63	-0.4
114,853	+		GFF6323	0.63	-0.3
114,853	+		GFF6323	0.63	-1.6
114,853	+		GFF6323	0.63	-3.3
114,853	+		GFF6323	0.63	+0.4
114,853	+		GFF6323	0.63	-1.5
114,853	+		GFF6323	0.63	-0.6
114,853	+		GFF6323	0.63	-0.4
114,853	+		GFF6323	0.63	-0.8
114,853	+		GFF6323	0.63	-1.4
114,853	+		GFF6323	0.63	-0.6
114,853	+		GFF6323	0.63	-1.2
114,854	-		GFF6323	0.63	+2.4
114,854	-		GFF6323	0.63	-3.5
114,854	-		GFF6323	0.63	-2.5
114,854	-		GFF6323	0.63	-0.1
114,854	-		GFF6323	0.63	-0.0
114,854	-		GFF6323	0.63	-3.1
114,854	-		GFF6323	0.63	-2.3
114,854	-		GFF6323	0.63	-1.5
114,854	-		GFF6323	0.63	-1.4
115,064	-		GFF6323	0.79	+0.3
115,513	+				-2.3
115,513	+				-2.6
115,513	+				-1.4
115,513	+				-0.7
115,513	+				-2.4
115,513	+				+0.3
115,513	+				-0.2
115,513	+				+3.2
115,513	+				+0.8
115,513	+				-0.4
115,513	+				+0.4
115,513	+				-0.4
115,513	+				-1.8
115,513	+				+1.8
115,513	+				-0.6
115,513	+				+1.4
115,513	+				-0.4
115,513	+				-2.7
115,513	+				-2.8
115,513	+				+0.1
115,514	-				+0.4
115,514	-				-2.5
115,514	-				+0.8
115,514	-				-0.6
115,514	-				-2.5
115,514	-				+4.2
115,514	-				-0.2
115,514	-				+0.4
115,514	-				-1.3
115,514	-				+1.4
115,600	+		GFF6324	0.13	-0.2
115,600	+		GFF6324	0.13	+1.4
115,600	+		GFF6324	0.13	-1.7
115,600	+		GFF6324	0.13	+1.4
115,601	-		GFF6324	0.13	+3.4
115,853	+		GFF6324	0.26	-1.7
116,056	+		GFF6324	0.36	-0.6
116,056	+		GFF6324	0.36	-0.3
116,119	+		GFF6324	0.39	-1.7
116,119	+		GFF6324	0.39	-0.7
116,120	-		GFF6324	0.39	-3.0
116,120	-		GFF6324	0.39	-0.2
116,206	+		GFF6324	0.44	-0.4
116,206	+		GFF6324	0.44	+1.6
116,206	+		GFF6324	0.44	-1.2
116,206	+		GFF6324	0.44	-0.2
116,206	+		GFF6324	0.44	-0.6
116,206	+		GFF6324	0.44	-0.4
116,206	+		GFF6324	0.44	-2.6
116,206	+		GFF6324	0.44	-0.2
116,206	+		GFF6324	0.44	-0.7
116,206	+		GFF6324	0.44	-1.2
116,207	-		GFF6324	0.44	+1.7
116,207	-		GFF6324	0.44	-1.4
116,207	-		GFF6324	0.44	-2.6
116,207	-		GFF6324	0.44	+1.4
116,207	-		GFF6324	0.44	-3.3
116,207	-		GFF6324	0.44	-0.9
116,260	+		GFF6324	0.47	-2.7
116,260	+		GFF6324	0.47	-2.4
116,261	-		GFF6324	0.47	-2.3
116,261	-		GFF6324	0.47	-1.9