Strain Fitness in Variovorax sp. SCN45 around GFF6275

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6273 and GFF6274 are separated by 65 nucleotidesGFF6274 and GFF6275 overlap by 4 nucleotidesGFF6275 and GFF6276 overlap by 11 nucleotides GFF6273 - Nicotinamide-nucleotide amidase (EC 3.5.1.42), at 64,409 to 64,918 GFF6273 GFF6274 - Ketosteroid isomerase-related protein, at 64,984 to 65,478 GFF6274 GFF6275 - hypothetical protein, at 65,475 to 65,795 GFF6275 GFF6276 - Uncharacterized MFS-type transporter, at 65,785 to 66,972 GFF6276 Position (kb) 65 66Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 64.589 kb on + strand, within GFF6273at 64.589 kb on + strand, within GFF6273at 64.589 kb on + strand, within GFF6273at 64.589 kb on + strand, within GFF6273at 64.589 kb on + strand, within GFF6273at 64.589 kb on + strand, within GFF6273at 64.590 kb on - strand, within GFF6273at 64.590 kb on - strand, within GFF6273at 64.590 kb on - strand, within GFF6273at 64.590 kb on - strand, within GFF6273at 64.590 kb on - strand, within GFF6273at 64.590 kb on - strand, within GFF6273at 64.877 kb on + strandat 64.877 kb on + strandat 64.878 kb on - strandat 64.878 kb on - strandat 64.944 kb on + strandat 64.945 kb on - strandat 64.945 kb on - strandat 64.945 kb on - strandat 64.945 kb on - strandat 65.023 kb on + strandat 65.023 kb on + strandat 65.023 kb on + strandat 65.024 kb on - strandat 65.024 kb on - strandat 65.024 kb on - strandat 65.024 kb on - strandat 65.024 kb on - strandat 65.024 kb on - strandat 65.024 kb on - strandat 65.068 kb on + strand, within GFF6274at 65.068 kb on + strand, within GFF6274at 65.068 kb on + strand, within GFF6274at 65.069 kb on - strand, within GFF6274at 65.069 kb on - strand, within GFF6274at 65.069 kb on - strand, within GFF6274at 65.069 kb on - strand, within GFF6274at 65.248 kb on + strand, within GFF6274at 65.248 kb on + strand, within GFF6274at 65.458 kb on + strandat 65.458 kb on + strandat 65.458 kb on + strandat 65.458 kb on + strandat 65.458 kb on + strandat 65.459 kb on - strandat 65.459 kb on - strandat 65.459 kb on - strandat 65.459 kb on - strandat 65.459 kb on - strandat 65.459 kb on - strandat 65.459 kb on - strandat 65.459 kb on - strandat 65.459 kb on - strandat 65.529 kb on + strand, within GFF6275at 65.530 kb on - strand, within GFF6275at 65.562 kb on + strand, within GFF6275at 65.562 kb on + strand, within GFF6275at 65.562 kb on + strand, within GFF6275at 65.563 kb on - strand, within GFF6275at 65.563 kb on - strand, within GFF6275at 65.563 kb on - strand, within GFF6275at 65.563 kb on - strand, within GFF6275at 65.563 kb on - strand, within GFF6275at 65.571 kb on + strand, within GFF6275at 65.571 kb on + strand, within GFF6275at 65.571 kb on + strand, within GFF6275at 65.571 kb on + strand, within GFF6275at 65.571 kb on + strand, within GFF6275at 65.571 kb on + strand, within GFF6275at 65.572 kb on - strand, within GFF6275at 65.572 kb on - strand, within GFF6275at 65.572 kb on - strand, within GFF6275at 65.572 kb on - strand, within GFF6275at 65.572 kb on - strand, within GFF6275at 65.572 kb on - strand, within GFF6275at 65.572 kb on - strand, within GFF6275at 65.727 kb on + strand, within GFF6275at 65.727 kb on + strand, within GFF6275at 65.727 kb on + strand, within GFF6275at 65.727 kb on + strand, within GFF6275at 65.728 kb on - strand, within GFF6275at 65.728 kb on - strand, within GFF6275at 65.728 kb on - strand, within GFF6275at 65.728 kb on - strand, within GFF6275at 65.728 kb on - strand, within GFF6275at 65.728 kb on - strand, within GFF6275at 65.728 kb on - strand, within GFF6275at 65.728 kb on - strand, within GFF6275at 65.748 kb on + strand, within GFF6275at 65.749 kb on - strand, within GFF6275at 65.749 kb on - strand, within GFF6275at 65.749 kb on - strand, within GFF6275at 66.008 kb on + strand, within GFF6276at 66.009 kb on - strand, within GFF6276at 66.029 kb on + strand, within GFF6276at 66.029 kb on + strand, within GFF6276at 66.030 kb on - strand, within GFF6276at 66.030 kb on - strand, within GFF6276at 66.131 kb on + strand, within GFF6276at 66.131 kb on + strand, within GFF6276at 66.132 kb on - strand, within GFF6276at 66.132 kb on - strand, within GFF6276at 66.132 kb on - strand, within GFF6276at 66.263 kb on + strand, within GFF6276at 66.263 kb on + strand, within GFF6276at 66.264 kb on - strand, within GFF6276at 66.264 kb on - strand, within GFF6276at 66.326 kb on + strand, within GFF6276at 66.326 kb on + strand, within GFF6276at 66.326 kb on + strand, within GFF6276at 66.326 kb on + strand, within GFF6276at 66.326 kb on + strand, within GFF6276at 66.326 kb on + strand, within GFF6276at 66.326 kb on + strand, within GFF6276at 66.326 kb on + strand, within GFF6276at 66.326 kb on + strand, within GFF6276at 66.326 kb on + strand, within GFF6276at 66.326 kb on + strand, within GFF6276at 66.327 kb on - strand, within GFF6276at 66.327 kb on - strand, within GFF6276at 66.327 kb on - strand, within GFF6276at 66.327 kb on - strand, within GFF6276at 66.330 kb on + strand, within GFF6276at 66.330 kb on + strand, within GFF6276at 66.330 kb on + strand, within GFF6276at 66.331 kb on - strand, within GFF6276at 66.455 kb on + strand, within GFF6276at 66.455 kb on + strand, within GFF6276at 66.456 kb on - strand, within GFF6276at 66.456 kb on - strand, within GFF6276at 66.521 kb on + strand, within GFF6276at 66.521 kb on + strand, within GFF6276at 66.521 kb on + strand, within GFF6276at 66.521 kb on + strand, within GFF6276at 66.521 kb on + strand, within GFF6276at 66.521 kb on + strand, within GFF6276at 66.521 kb on + strand, within GFF6276at 66.521 kb on + strand, within GFF6276at 66.522 kb on - strand, within GFF6276at 66.522 kb on - strand, within GFF6276at 66.522 kb on - strand, within GFF6276at 66.522 kb on - strand, within GFF6276at 66.522 kb on - strand, within GFF6276at 66.522 kb on - strand, within GFF6276at 66.522 kb on - strand, within GFF6276at 66.522 kb on - strand, within GFF6276at 66.522 kb on - strand, within GFF6276at 66.522 kb on - strand, within GFF6276at 66.522 kb on - strand, within GFF6276at 66.522 kb on - strand, within GFF6276at 66.522 kb on - strand, within GFF6276at 66.522 kb on - strand, within GFF6276at 66.522 kb on - strand, within GFF6276at 66.710 kb on + strand, within GFF6276at 66.710 kb on + strand, within GFF6276at 66.710 kb on + strand, within GFF6276at 66.710 kb on + strand, within GFF6276at 66.710 kb on + strand, within GFF6276at 66.710 kb on + strand, within GFF6276at 66.710 kb on + strand, within GFF6276at 66.710 kb on + strand, within GFF6276at 66.711 kb on - strand, within GFF6276at 66.711 kb on - strand, within GFF6276at 66.711 kb on - strand, within GFF6276at 66.711 kb on - strand, within GFF6276at 66.711 kb on - strand, within GFF6276at 66.711 kb on - strand, within GFF6276

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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64,589 + GFF6273 0.35 -3.1
64,589 + GFF6273 0.35 -3.9
64,589 + GFF6273 0.35 -2.0
64,589 + GFF6273 0.35 -3.7
64,589 + GFF6273 0.35 -1.3
64,589 + GFF6273 0.35 -3.3
64,590 - GFF6273 0.35 -2.1
64,590 - GFF6273 0.35 +1.9
64,590 - GFF6273 0.35 -2.4
64,590 - GFF6273 0.35 +1.4
64,590 - GFF6273 0.35 -1.8
64,590 - GFF6273 0.35 -1.0
64,877 + +1.4
64,877 + -2.2
64,878 - -0.9
64,878 - -1.4
64,944 + +0.9
64,945 - -0.4
64,945 - +0.2
64,945 - -0.7
64,945 - -3.2
65,023 + +0.1
65,023 + -0.6
65,023 + +1.2
65,024 - +1.0
65,024 - +0.1
65,024 - -1.2
65,024 - -2.0
65,024 - -2.8
65,024 - -0.9
65,024 - -0.6
65,068 + GFF6274 0.17 +1.0
65,068 + GFF6274 0.17 +1.1
65,068 + GFF6274 0.17 -0.2
65,069 - GFF6274 0.17 -0.5
65,069 - GFF6274 0.17 -0.2
65,069 - GFF6274 0.17 -0.7
65,069 - GFF6274 0.17 -1.0
65,248 + GFF6274 0.53 -1.0
65,248 + GFF6274 0.53 -2.4
65,458 + -0.2
65,458 + +1.4
65,458 + -2.1
65,458 + -0.2
65,458 + +0.8
65,459 - +0.2
65,459 - -2.1
65,459 - -1.0
65,459 - -0.5
65,459 - +0.4
65,459 - -1.2
65,459 - -2.7
65,459 - +2.2
65,459 - +0.4
65,529 + GFF6275 0.17 +2.4
65,530 - GFF6275 0.17 -2.3
65,562 + GFF6275 0.27 -1.7
65,562 + GFF6275 0.27 +0.7
65,562 + GFF6275 0.27 +1.1
65,563 - GFF6275 0.27 -1.8
65,563 - GFF6275 0.27 +1.2
65,563 - GFF6275 0.27 +1.2
65,563 - GFF6275 0.27 -0.9
65,563 - GFF6275 0.27 +1.7
65,571 + GFF6275 0.30 +1.8
65,571 + GFF6275 0.30 +0.1
65,571 + GFF6275 0.30 +0.1
65,571 + GFF6275 0.30 -0.9
65,571 + GFF6275 0.30 +1.7
65,571 + GFF6275 0.30 -1.2
65,572 - GFF6275 0.30 +3.2
65,572 - GFF6275 0.30 +0.6
65,572 - GFF6275 0.30 -0.8
65,572 - GFF6275 0.30 -1.7
65,572 - GFF6275 0.30 -1.0
65,572 - GFF6275 0.30 -1.0
65,572 - GFF6275 0.30 -0.3
65,727 + GFF6275 0.79 +0.9
65,727 + GFF6275 0.79 -0.4
65,727 + GFF6275 0.79 -0.8
65,727 + GFF6275 0.79 +1.0
65,728 - GFF6275 0.79 +0.4
65,728 - GFF6275 0.79 -0.1
65,728 - GFF6275 0.79 -2.0
65,728 - GFF6275 0.79 -0.3
65,728 - GFF6275 0.79 +1.0
65,728 - GFF6275 0.79 -1.3
65,728 - GFF6275 0.79 -0.7
65,728 - GFF6275 0.79 -0.3
65,748 + GFF6275 0.85 -2.6
65,749 - GFF6275 0.85 -2.2
65,749 - GFF6275 0.85 -1.1
65,749 - GFF6275 0.85 -0.4
66,008 + GFF6276 0.19 -2.8
66,009 - GFF6276 0.19 -0.4
66,029 + GFF6276 0.21 +1.0
66,029 + GFF6276 0.21 -1.5
66,030 - GFF6276 0.21 -0.6
66,030 - GFF6276 0.21 -1.7
66,131 + GFF6276 0.29 +1.5
66,131 + GFF6276 0.29 -2.3
66,132 - GFF6276 0.29 -1.6
66,132 - GFF6276 0.29 -1.4
66,132 - GFF6276 0.29 -2.5
66,263 + GFF6276 0.40 -1.7
66,263 + GFF6276 0.40 -1.1
66,264 - GFF6276 0.40 -0.8
66,264 - GFF6276 0.40 -3.2
66,326 + GFF6276 0.46 +0.3
66,326 + GFF6276 0.46 -1.6
66,326 + GFF6276 0.46 +0.4
66,326 + GFF6276 0.46 -0.3
66,326 + GFF6276 0.46 +0.3
66,326 + GFF6276 0.46 +0.4
66,326 + GFF6276 0.46 -0.7
66,326 + GFF6276 0.46 +1.7
66,326 + GFF6276 0.46 +0.2
66,326 + GFF6276 0.46 -0.9
66,326 + GFF6276 0.46 -1.6
66,327 - GFF6276 0.46 +0.9
66,327 - GFF6276 0.46 -1.8
66,327 - GFF6276 0.46 +0.2
66,327 - GFF6276 0.46 -0.3
66,330 + GFF6276 0.46 +0.4
66,330 + GFF6276 0.46 -1.0
66,330 + GFF6276 0.46 +1.1
66,331 - GFF6276 0.46 -1.2
66,455 + GFF6276 0.56 -3.3
66,455 + GFF6276 0.56 -1.0
66,456 - GFF6276 0.56 -0.0
66,456 - GFF6276 0.56 -1.7
66,521 + GFF6276 0.62 -0.9
66,521 + GFF6276 0.62 -2.2
66,521 + GFF6276 0.62 +1.1
66,521 + GFF6276 0.62 -0.3
66,521 + GFF6276 0.62 -2.2
66,521 + GFF6276 0.62 -1.9
66,521 + GFF6276 0.62 -1.0
66,521 + GFF6276 0.62 -2.3
66,522 - GFF6276 0.62 +2.4
66,522 - GFF6276 0.62 -1.7
66,522 - GFF6276 0.62 +1.4
66,522 - GFF6276 0.62 -0.4
66,522 - GFF6276 0.62 -1.8
66,522 - GFF6276 0.62 +0.1
66,522 - GFF6276 0.62 -2.3
66,522 - GFF6276 0.62 -0.9
66,522 - GFF6276 0.62 -0.4
66,522 - GFF6276 0.62 -1.3
66,522 - GFF6276 0.62 +0.4
66,522 - GFF6276 0.62 -2.1
66,522 - GFF6276 0.62 -2.1
66,522 - GFF6276 0.62 +0.7
66,522 - GFF6276 0.62 +0.7
66,710 + GFF6276 0.78 -2.0
66,710 + GFF6276 0.78 -1.0
66,710 + GFF6276 0.78 -0.7
66,710 + GFF6276 0.78 +0.1
66,710 + GFF6276 0.78 -0.6
66,710 + GFF6276 0.78 +0.2
66,710 + GFF6276 0.78 -1.1
66,710 + GFF6276 0.78 +0.4
66,711 - GFF6276 0.78 -0.6
66,711 - GFF6276 0.78 -1.7
66,711 - GFF6276 0.78 -0.2
66,711 - GFF6276 0.78 +0.1
66,711 - GFF6276 0.78 -0.6
66,711 - GFF6276 0.78 +1.4

Or see this region's nucleotide sequence