Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6261 and GFF6262 are separated by 77 nucleotides GFF6262 and GFF6263 overlap by 8 nucleotides GFF6263 and GFF6264 overlap by 4 nucleotides GFF6264 and GFF6265 overlap by 19 nucleotides
GFF6261 - Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG (EC 2.7.8.37), at 54,074 to 54,577
GFF6261
GFF6262 - Transcriptional regulator PhnF, at 54,655 to 55,410
GFF6262
GFF6263 - Uncharacterized protein Atu0170, clustered with phosphonate utilization, at 55,403 to 56,137
GFF6263
GFF6264 - Ribose 1,5-bisphosphate phosphokinase PhnN (EC 2.7.4.23), at 56,134 to 56,727
GFF6264
GFF6265 - Thiamine-monophosphate kinase (EC 2.7.4.16), at 56,709 to 57,665
GFF6265
Position (kb) 55
56
57 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 54.586 kb on + strand at 54.587 kb on - strand at 54.587 kb on - strand at 54.587 kb on - strand at 54.603 kb on - strand at 54.632 kb on + strand at 54.632 kb on + strand at 54.632 kb on + strand at 54.632 kb on + strand at 54.632 kb on + strand at 54.633 kb on - strand at 54.633 kb on - strand at 54.633 kb on - strand at 54.633 kb on - strand at 54.633 kb on - strand at 54.633 kb on - strand at 54.633 kb on - strand at 54.636 kb on + strand at 54.636 kb on + strand at 54.637 kb on - strand at 54.637 kb on - strand at 54.763 kb on + strand, within GFF6262 at 54.763 kb on + strand, within GFF6262 at 54.764 kb on - strand, within GFF6262 at 54.898 kb on + strand, within GFF6262 at 54.898 kb on + strand, within GFF6262 at 54.898 kb on + strand, within GFF6262 at 54.898 kb on + strand, within GFF6262 at 54.898 kb on + strand, within GFF6262 at 54.899 kb on - strand, within GFF6262 at 55.216 kb on + strand, within GFF6262 at 55.216 kb on + strand, within GFF6262 at 55.216 kb on + strand, within GFF6262 at 55.216 kb on + strand, within GFF6262 at 55.352 kb on - strand at 55.917 kb on - strand, within GFF6263 at 56.152 kb on + strand at 56.152 kb on + strand at 56.153 kb on - strand at 56.153 kb on - strand at 56.153 kb on - strand at 56.368 kb on + strand, within GFF6264 at 56.369 kb on - strand, within GFF6264 at 56.440 kb on + strand, within GFF6264 at 56.440 kb on + strand, within GFF6264 at 56.441 kb on - strand, within GFF6264 at 56.592 kb on - strand, within GFF6264 at 56.697 kb on + strand at 56.697 kb on + strand at 56.698 kb on - strand at 56.698 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 54,586 + -3.6 54,587 - -2.7 54,587 - -2.0 54,587 - -1.6 54,603 - -0.5 54,632 + +0.6 54,632 + +0.6 54,632 + +0.4 54,632 + -0.7 54,632 + -1.2 54,633 - -0.7 54,633 - +0.1 54,633 - -2.0 54,633 - -2.2 54,633 - -0.3 54,633 - +0.5 54,633 - -1.3 54,636 + +0.8 54,636 + -1.9 54,637 - +0.2 54,637 - -1.3 54,763 + GFF6262 0.14 +0.4 54,763 + GFF6262 0.14 -2.2 54,764 - GFF6262 0.14 -2.4 54,898 + GFF6262 0.32 +0.6 54,898 + GFF6262 0.32 +1.4 54,898 + GFF6262 0.32 -1.9 54,898 + GFF6262 0.32 +0.8 54,898 + GFF6262 0.32 +1.1 54,899 - GFF6262 0.32 +0.5 55,216 + GFF6262 0.74 +1.9 55,216 + GFF6262 0.74 -1.4 55,216 + GFF6262 0.74 +0.0 55,216 + GFF6262 0.74 -1.2 55,352 - +0.8 55,917 - GFF6263 0.70 -1.9 56,152 + -1.3 56,152 + +2.8 56,153 - +2.6 56,153 - +0.7 56,153 - -0.2 56,368 + GFF6264 0.39 -0.4 56,369 - GFF6264 0.40 +0.2 56,440 + GFF6264 0.52 +0.3 56,440 + GFF6264 0.52 -1.0 56,441 - GFF6264 0.52 -3.0 56,592 - GFF6264 0.77 -1.1 56,697 + +0.8 56,697 + +0.5 56,698 - -1.6 56,698 - -0.9
Or see this region's nucleotide sequence