Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6224 and GFF6225 are separated by 130 nucleotides GFF6225 and GFF6226 overlap by 1 nucleotides
GFF6224 - T6SS component TssK (ImpJ/VasE), at 5,661 to 6,992
GFF6224
GFF6225 - ABC transporter, substrate-binding protein (cluster 12, methionine/phosphonates), at 7,123 to 8,187
GFF6225
GFF6226 - ABC transporter, substrate-binding protein (cluster 12, methionine/phosphonates), at 8,187 to 9,167
GFF6226
Position (kb) 7
8
9 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 6.133 kb on + strand, within GFF6224 at 6.133 kb on + strand, within GFF6224 at 6.133 kb on + strand, within GFF6224 at 6.133 kb on + strand, within GFF6224 at 6.134 kb on - strand, within GFF6224 at 6.134 kb on - strand, within GFF6224 at 6.134 kb on - strand, within GFF6224 at 6.644 kb on - strand, within GFF6224 at 6.644 kb on - strand, within GFF6224 at 6.872 kb on - strand at 6.872 kb on - strand at 7.072 kb on - strand at 7.079 kb on - strand at 7.112 kb on + strand at 7.112 kb on + strand at 7.113 kb on - strand at 7.163 kb on + strand at 7.163 kb on + strand at 7.163 kb on + strand at 7.163 kb on + strand at 7.164 kb on - strand at 7.164 kb on - strand at 7.165 kb on + strand at 7.250 kb on + strand, within GFF6225 at 7.250 kb on + strand, within GFF6225 at 7.298 kb on + strand, within GFF6225 at 7.305 kb on - strand, within GFF6225 at 7.916 kb on + strand, within GFF6225 at 7.916 kb on + strand, within GFF6225 at 7.916 kb on + strand, within GFF6225 at 7.916 kb on + strand, within GFF6225 at 7.917 kb on - strand, within GFF6225 at 7.917 kb on - strand, within GFF6225 at 7.917 kb on - strand, within GFF6225 at 7.931 kb on + strand, within GFF6225 at 7.931 kb on + strand, within GFF6225 at 7.932 kb on - strand, within GFF6225 at 7.932 kb on - strand, within GFF6225 at 8.434 kb on + strand, within GFF6226 at 8.434 kb on + strand, within GFF6226 at 8.434 kb on + strand, within GFF6226 at 8.435 kb on - strand, within GFF6226 at 8.435 kb on - strand, within GFF6226 at 8.435 kb on - strand, within GFF6226 at 8.435 kb on - strand, within GFF6226 at 8.435 kb on - strand, within GFF6226 at 8.435 kb on - strand, within GFF6226 at 8.435 kb on - strand, within GFF6226 at 8.435 kb on - strand, within GFF6226 at 8.980 kb on + strand, within GFF6226 at 8.981 kb on - strand, within GFF6226
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 6,133 + GFF6224 0.35 -3.0 6,133 + GFF6224 0.35 -0.4 6,133 + GFF6224 0.35 +0.1 6,133 + GFF6224 0.35 -1.8 6,134 - GFF6224 0.36 -1.2 6,134 - GFF6224 0.36 -1.2 6,134 - GFF6224 0.36 +0.4 6,644 - GFF6224 0.74 +0.4 6,644 - GFF6224 0.74 +0.2 6,872 - -1.7 6,872 - -2.5 7,072 - -1.6 7,079 - +1.5 7,112 + +0.1 7,112 + -2.2 7,113 - -1.2 7,163 + -0.6 7,163 + +0.8 7,163 + +3.2 7,163 + -0.5 7,164 - -3.8 7,164 - -0.2 7,165 + +0.2 7,250 + GFF6225 0.12 +0.6 7,250 + GFF6225 0.12 +0.2 7,298 + GFF6225 0.16 -2.6 7,305 - GFF6225 0.17 -2.1 7,916 + GFF6225 0.74 +0.1 7,916 + GFF6225 0.74 -0.6 7,916 + GFF6225 0.74 +1.6 7,916 + GFF6225 0.74 -0.4 7,917 - GFF6225 0.75 +1.4 7,917 - GFF6225 0.75 -1.9 7,917 - GFF6225 0.75 -1.3 7,931 + GFF6225 0.76 -2.5 7,931 + GFF6225 0.76 +0.8 7,932 - GFF6225 0.76 -2.5 7,932 - GFF6225 0.76 +1.6 8,434 + GFF6226 0.25 -0.6 8,434 + GFF6226 0.25 -2.1 8,434 + GFF6226 0.25 +0.4 8,435 - GFF6226 0.25 +2.4 8,435 - GFF6226 0.25 -0.5 8,435 - GFF6226 0.25 -2.0 8,435 - GFF6226 0.25 +1.5 8,435 - GFF6226 0.25 +0.3 8,435 - GFF6226 0.25 -2.4 8,435 - GFF6226 0.25 +1.1 8,435 - GFF6226 0.25 -1.2 8,980 + GFF6226 0.81 -2.0 8,981 - GFF6226 0.81 -0.4
Or see this region's nucleotide sequence