Strain Fitness in Variovorax sp. SCN45 around GFF6211

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6209 and GFF6210 overlap by 4 nucleotidesGFF6210 and GFF6211 are separated by 25 nucleotidesGFF6211 and GFF6212 are separated by 169 nucleotidesGFF6212 and GFF6213 are separated by 140 nucleotides GFF6209 - ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines), at 116,999 to 117,742 GFF6209 GFF6210 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 117,739 to 118,527 GFF6210 GFF6211 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 118,553 to 119,317 GFF6211 GFF6212 - Transcriptional regulator, AsnC family, at 119,487 to 119,909 GFF6212 GFF6213 - Ornithine cyclodeaminase (EC 4.3.1.12), at 120,050 to 121,099 GFF6213 Position (kb) 118 119 120Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 117.818 kb on + strand, within GFF6210at 117.818 kb on + strand, within GFF6210at 117.819 kb on - strand, within GFF6210at 117.819 kb on - strand, within GFF6210at 117.819 kb on - strand, within GFF6210at 117.819 kb on - strand, within GFF6210at 117.819 kb on - strand, within GFF6210at 117.883 kb on + strand, within GFF6210at 117.883 kb on + strand, within GFF6210at 117.883 kb on + strand, within GFF6210at 117.883 kb on + strand, within GFF6210at 117.883 kb on + strand, within GFF6210at 117.884 kb on - strand, within GFF6210at 117.884 kb on - strand, within GFF6210at 118.013 kb on + strand, within GFF6210at 118.014 kb on - strand, within GFF6210at 118.014 kb on - strand, within GFF6210at 118.014 kb on - strand, within GFF6210at 118.100 kb on + strand, within GFF6210at 118.101 kb on - strand, within GFF6210at 118.101 kb on - strand, within GFF6210at 118.101 kb on - strand, within GFF6210at 118.101 kb on - strand, within GFF6210at 118.236 kb on + strand, within GFF6210at 118.236 kb on + strand, within GFF6210at 118.236 kb on + strand, within GFF6210at 118.236 kb on + strand, within GFF6210at 118.238 kb on + strand, within GFF6210at 118.238 kb on + strand, within GFF6210at 118.238 kb on + strand, within GFF6210at 118.238 kb on + strand, within GFF6210at 118.238 kb on + strand, within GFF6210at 118.239 kb on - strand, within GFF6210at 118.239 kb on - strand, within GFF6210at 118.239 kb on - strand, within GFF6210at 118.239 kb on - strand, within GFF6210at 118.239 kb on - strand, within GFF6210at 118.239 kb on - strand, within GFF6210at 118.239 kb on - strand, within GFF6210at 118.239 kb on - strand, within GFF6210at 118.564 kb on + strandat 118.564 kb on + strandat 118.564 kb on + strandat 118.564 kb on + strandat 118.565 kb on - strandat 118.565 kb on - strandat 118.565 kb on - strandat 118.565 kb on - strandat 118.565 kb on - strandat 118.581 kb on + strandat 118.581 kb on + strandat 118.581 kb on + strandat 118.581 kb on + strandat 118.582 kb on - strandat 118.582 kb on - strandat 118.582 kb on - strandat 118.602 kb on + strandat 118.602 kb on + strandat 118.602 kb on + strandat 118.602 kb on + strandat 118.603 kb on - strandat 118.603 kb on - strandat 118.603 kb on - strandat 118.603 kb on - strandat 118.603 kb on - strandat 118.603 kb on - strandat 118.641 kb on + strand, within GFF6211at 118.784 kb on + strand, within GFF6211at 118.784 kb on + strand, within GFF6211at 118.785 kb on - strand, within GFF6211at 118.785 kb on - strand, within GFF6211at 118.785 kb on - strand, within GFF6211at 118.785 kb on - strand, within GFF6211at 118.785 kb on - strand, within GFF6211at 118.878 kb on + strand, within GFF6211at 118.878 kb on + strand, within GFF6211at 118.878 kb on + strand, within GFF6211at 118.879 kb on - strand, within GFF6211at 118.879 kb on - strand, within GFF6211at 118.879 kb on - strand, within GFF6211at 118.879 kb on - strand, within GFF6211at 118.879 kb on - strand, within GFF6211at 118.975 kb on - strand, within GFF6211at 118.975 kb on - strand, within GFF6211at 118.975 kb on - strand, within GFF6211at 119.178 kb on + strand, within GFF6211at 119.178 kb on + strand, within GFF6211at 119.178 kb on + strand, within GFF6211at 119.178 kb on + strand, within GFF6211at 119.178 kb on + strand, within GFF6211at 119.178 kb on + strand, within GFF6211at 119.179 kb on - strand, within GFF6211at 119.179 kb on - strand, within GFF6211at 119.267 kb on + strandat 119.267 kb on + strandat 119.267 kb on + strandat 119.267 kb on + strandat 119.267 kb on + strandat 119.268 kb on - strandat 119.268 kb on - strandat 119.268 kb on - strandat 119.268 kb on - strandat 119.268 kb on - strandat 119.268 kb on - strandat 119.268 kb on - strandat 119.268 kb on - strandat 119.268 kb on - strandat 119.268 kb on - strandat 119.526 kb on - strandat 119.661 kb on + strand, within GFF6212at 119.661 kb on + strand, within GFF6212at 119.661 kb on + strand, within GFF6212at 119.661 kb on + strand, within GFF6212at 119.661 kb on + strand, within GFF6212at 119.661 kb on + strand, within GFF6212at 119.661 kb on + strand, within GFF6212at 119.662 kb on - strand, within GFF6212at 119.662 kb on - strand, within GFF6212at 119.662 kb on - strand, within GFF6212at 119.722 kb on - strand, within GFF6212at 119.762 kb on - strand, within GFF6212at 119.762 kb on - strand, within GFF6212at 119.913 kb on + strandat 119.947 kb on + strandat 119.948 kb on - strandat 120.063 kb on + strandat 120.245 kb on + strand, within GFF6213at 120.245 kb on + strand, within GFF6213at 120.245 kb on + strand, within GFF6213at 120.245 kb on + strand, within GFF6213at 120.245 kb on + strand, within GFF6213at 120.245 kb on + strand, within GFF6213at 120.245 kb on + strand, within GFF6213at 120.245 kb on + strand, within GFF6213at 120.245 kb on + strand, within GFF6213at 120.245 kb on + strand, within GFF6213at 120.245 kb on + strand, within GFF6213at 120.245 kb on + strand, within GFF6213at 120.245 kb on + strand, within GFF6213at 120.245 kb on + strand, within GFF6213at 120.245 kb on + strand, within GFF6213at 120.245 kb on + strand, within GFF6213at 120.245 kb on + strand, within GFF6213at 120.246 kb on - strand, within GFF6213at 120.246 kb on - strand, within GFF6213at 120.246 kb on - strand, within GFF6213at 120.246 kb on - strand, within GFF6213at 120.246 kb on - strand, within GFF6213at 120.246 kb on - strand, within GFF6213at 120.246 kb on - strand, within GFF6213at 120.246 kb on - strand, within GFF6213at 120.246 kb on - strand, within GFF6213at 120.246 kb on - strand, within GFF6213at 120.246 kb on - strand, within GFF6213at 120.246 kb on - strand, within GFF6213at 120.246 kb on - strand, within GFF6213at 120.246 kb on - strand, within GFF6213at 120.246 kb on - strand, within GFF6213at 120.246 kb on - strand, within GFF6213at 120.257 kb on + strand, within GFF6213at 120.257 kb on + strand, within GFF6213at 120.257 kb on + strand, within GFF6213at 120.258 kb on - strand, within GFF6213at 120.296 kb on + strand, within GFF6213at 120.296 kb on + strand, within GFF6213at 120.296 kb on + strand, within GFF6213at 120.296 kb on + strand, within GFF6213at 120.297 kb on - strand, within GFF6213at 120.297 kb on - strand, within GFF6213at 120.298 kb on + strand, within GFF6213at 120.298 kb on + strand, within GFF6213at 120.298 kb on + strand, within GFF6213at 120.299 kb on - strand, within GFF6213at 120.299 kb on - strand, within GFF6213at 120.299 kb on - strand, within GFF6213

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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117,818 + GFF6210 0.10 -1.9
117,818 + GFF6210 0.10 -0.4
117,819 - GFF6210 0.10 -1.8
117,819 - GFF6210 0.10 -3.7
117,819 - GFF6210 0.10 -1.2
117,819 - GFF6210 0.10 -0.0
117,819 - GFF6210 0.10 +2.7
117,883 + GFF6210 0.18 -0.5
117,883 + GFF6210 0.18 -1.9
117,883 + GFF6210 0.18 -1.1
117,883 + GFF6210 0.18 +2.1
117,883 + GFF6210 0.18 -0.1
117,884 - GFF6210 0.18 +3.4
117,884 - GFF6210 0.18 +0.8
118,013 + GFF6210 0.35 -1.8
118,014 - GFF6210 0.35 +0.3
118,014 - GFF6210 0.35 +0.6
118,014 - GFF6210 0.35 -2.8
118,100 + GFF6210 0.46 +1.0
118,101 - GFF6210 0.46 -0.7
118,101 - GFF6210 0.46 +0.5
118,101 - GFF6210 0.46 +1.3
118,101 - GFF6210 0.46 -1.3
118,236 + GFF6210 0.63 -0.7
118,236 + GFF6210 0.63 +0.5
118,236 + GFF6210 0.63 +1.7
118,236 + GFF6210 0.63 -0.4
118,238 + GFF6210 0.63 +1.1
118,238 + GFF6210 0.63 +0.3
118,238 + GFF6210 0.63 +1.2
118,238 + GFF6210 0.63 -2.1
118,238 + GFF6210 0.63 -0.5
118,239 - GFF6210 0.63 +2.7
118,239 - GFF6210 0.63 +0.1
118,239 - GFF6210 0.63 -1.8
118,239 - GFF6210 0.63 -1.1
118,239 - GFF6210 0.63 -1.2
118,239 - GFF6210 0.63 -1.1
118,239 - GFF6210 0.63 +0.1
118,239 - GFF6210 0.63 +0.4
118,564 + -0.8
118,564 + +0.4
118,564 + -1.9
118,564 + -0.2
118,565 - -1.3
118,565 - -4.3
118,565 - +2.1
118,565 - -2.1
118,565 - -0.9
118,581 + +1.1
118,581 + +0.5
118,581 + -1.1
118,581 + -1.8
118,582 - +0.3
118,582 - -1.2
118,582 - +1.2
118,602 + -1.7
118,602 + +0.2
118,602 + -1.2
118,602 + +0.8
118,603 - -0.7
118,603 - +1.5
118,603 - +0.3
118,603 - -1.1
118,603 - -0.3
118,603 - -1.7
118,641 + GFF6211 0.12 +0.2
118,784 + GFF6211 0.30 -1.8
118,784 + GFF6211 0.30 +0.1
118,785 - GFF6211 0.30 -2.6
118,785 - GFF6211 0.30 -0.4
118,785 - GFF6211 0.30 +0.1
118,785 - GFF6211 0.30 +0.3
118,785 - GFF6211 0.30 +2.1
118,878 + GFF6211 0.42 +0.5
118,878 + GFF6211 0.42 +0.1
118,878 + GFF6211 0.42 +0.1
118,879 - GFF6211 0.43 -2.8
118,879 - GFF6211 0.43 +0.5
118,879 - GFF6211 0.43 +1.1
118,879 - GFF6211 0.43 -0.2
118,879 - GFF6211 0.43 -1.4
118,975 - GFF6211 0.55 +1.3
118,975 - GFF6211 0.55 -0.5
118,975 - GFF6211 0.55 -1.7
119,178 + GFF6211 0.82 -1.4
119,178 + GFF6211 0.82 -0.2
119,178 + GFF6211 0.82 +0.1
119,178 + GFF6211 0.82 -1.4
119,178 + GFF6211 0.82 -3.8
119,178 + GFF6211 0.82 -3.4
119,179 - GFF6211 0.82 +1.5
119,179 - GFF6211 0.82 -2.4
119,267 + -1.0
119,267 + +2.1
119,267 + -0.3
119,267 + -0.2
119,267 + -1.2
119,268 - -1.6
119,268 - -1.7
119,268 - +1.4
119,268 - -0.2
119,268 - +0.7
119,268 - -2.0
119,268 - +2.1
119,268 - +0.3
119,268 - +0.5
119,268 - +0.5
119,526 - +0.3
119,661 + GFF6212 0.41 +1.3
119,661 + GFF6212 0.41 -0.2
119,661 + GFF6212 0.41 +2.1
119,661 + GFF6212 0.41 +1.6
119,661 + GFF6212 0.41 -0.3
119,661 + GFF6212 0.41 -2.7
119,661 + GFF6212 0.41 +1.2
119,662 - GFF6212 0.41 +1.6
119,662 - GFF6212 0.41 -0.4
119,662 - GFF6212 0.41 -1.3
119,722 - GFF6212 0.56 +2.1
119,762 - GFF6212 0.65 +0.1
119,762 - GFF6212 0.65 +0.4
119,913 + -0.5
119,947 + +0.5
119,948 - -3.9
120,063 + -0.6
120,245 + GFF6213 0.19 -0.5
120,245 + GFF6213 0.19 -2.8
120,245 + GFF6213 0.19 -1.0
120,245 + GFF6213 0.19 +0.6
120,245 + GFF6213 0.19 +0.1
120,245 + GFF6213 0.19 +0.6
120,245 + GFF6213 0.19 -1.6
120,245 + GFF6213 0.19 -0.1
120,245 + GFF6213 0.19 -1.4
120,245 + GFF6213 0.19 +0.9
120,245 + GFF6213 0.19 +2.9
120,245 + GFF6213 0.19 -0.3
120,245 + GFF6213 0.19 +0.2
120,245 + GFF6213 0.19 -1.0
120,245 + GFF6213 0.19 +0.1
120,245 + GFF6213 0.19 -0.7
120,245 + GFF6213 0.19 +1.1
120,246 - GFF6213 0.19 -3.2
120,246 - GFF6213 0.19 -2.7
120,246 - GFF6213 0.19 -0.7
120,246 - GFF6213 0.19 -1.4
120,246 - GFF6213 0.19 -1.0
120,246 - GFF6213 0.19 -2.2
120,246 - GFF6213 0.19 -1.6
120,246 - GFF6213 0.19 -1.4
120,246 - GFF6213 0.19 +2.2
120,246 - GFF6213 0.19 -1.9
120,246 - GFF6213 0.19 -2.0
120,246 - GFF6213 0.19 -2.6
120,246 - GFF6213 0.19 -2.7
120,246 - GFF6213 0.19 -1.1
120,246 - GFF6213 0.19 -1.6
120,246 - GFF6213 0.19 -1.5
120,257 + GFF6213 0.20 -1.6
120,257 + GFF6213 0.20 -0.3
120,257 + GFF6213 0.20 +1.5
120,258 - GFF6213 0.20 -2.4
120,296 + GFF6213 0.23 -2.4
120,296 + GFF6213 0.23 -1.2
120,296 + GFF6213 0.23 -1.2
120,296 + GFF6213 0.23 -1.2
120,297 - GFF6213 0.24 -2.9
120,297 - GFF6213 0.24 -2.0
120,298 + GFF6213 0.24 +0.4
120,298 + GFF6213 0.24 +0.9
120,298 + GFF6213 0.24 -0.5
120,299 - GFF6213 0.24 -3.6
120,299 - GFF6213 0.24 -1.1
120,299 - GFF6213 0.24 -0.6

Or see this region's nucleotide sequence