Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF615 and GFF616 are separated by 21 nucleotides GFF616 and GFF617 are separated by 175 nucleotides GFF617 and GFF618 overlap by 4 nucleotides GFF618 and GFF619 are separated by 21 nucleotides
GFF615 - beta-glucosidase (EC 3.2.1.21), at 662,358 to 664,643
GFF615
GFF616 - hypothetical protein, at 664,665 to 665,018
GFF616
GFF617 - no description, at 665,194 to 665,487
GFF617
GFF618 - Lactoylglutathione lyase and related lyases, at 665,484 to 665,834
GFF618
GFF619 - Aspartate carbamoyltransferase (EC 2.1.3.2), at 665,856 to 667,154
GFF619
Position (kb) 665
666 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 665.034 kb on + strand at 665.041 kb on - strand at 665.041 kb on - strand at 665.049 kb on + strand at 665.050 kb on - strand at 665.059 kb on - strand at 665.068 kb on + strand at 665.068 kb on + strand at 665.068 kb on + strand at 665.072 kb on + strand at 665.072 kb on + strand at 665.073 kb on - strand at 665.073 kb on - strand at 665.094 kb on + strand at 665.094 kb on + strand at 665.157 kb on + strand at 665.157 kb on + strand at 665.158 kb on - strand at 665.216 kb on + strand at 665.217 kb on - strand at 665.217 kb on - strand at 665.260 kb on + strand, within GFF617 at 665.261 kb on - strand, within GFF617 at 665.261 kb on - strand, within GFF617 at 665.396 kb on + strand, within GFF617 at 665.547 kb on + strand, within GFF618 at 665.784 kb on + strand, within GFF618 at 666.211 kb on + strand, within GFF619 at 666.211 kb on + strand, within GFF619 at 666.352 kb on + strand, within GFF619 at 666.352 kb on + strand, within GFF619 at 666.352 kb on + strand, within GFF619 at 666.353 kb on - strand, within GFF619 at 666.353 kb on - strand, within GFF619 at 666.353 kb on - strand, within GFF619 at 666.353 kb on - strand, within GFF619 at 666.353 kb on - strand, within GFF619 at 666.394 kb on + strand, within GFF619 at 666.395 kb on - strand, within GFF619 at 666.472 kb on + strand, within GFF619 at 666.472 kb on + strand, within GFF619 at 666.472 kb on + strand, within GFF619 at 666.473 kb on - strand, within GFF619 at 666.473 kb on - strand, within GFF619 at 666.473 kb on - strand, within GFF619 at 666.604 kb on + strand, within GFF619 at 666.605 kb on - strand, within GFF619 at 666.632 kb on - strand, within GFF619
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 665,034 + -0.4 665,041 - +0.5 665,041 - -0.7 665,049 + +0.4 665,050 - -3.4 665,059 - -0.2 665,068 + +0.3 665,068 + -1.7 665,068 + -0.3 665,072 + -2.6 665,072 + -1.2 665,073 - +2.4 665,073 - +0.5 665,094 + -1.6 665,094 + +0.5 665,157 + -1.7 665,157 + -0.2 665,158 - -1.0 665,216 + +0.5 665,217 - +0.2 665,217 - -3.4 665,260 + GFF617 0.22 -1.4 665,261 - GFF617 0.23 -1.6 665,261 - GFF617 0.23 +1.8 665,396 + GFF617 0.69 +0.3 665,547 + GFF618 0.18 -1.8 665,784 + GFF618 0.85 -1.9 666,211 + GFF619 0.27 -3.7 666,211 + GFF619 0.27 -0.7 666,352 + GFF619 0.38 -1.4 666,352 + GFF619 0.38 -1.6 666,352 + GFF619 0.38 -0.2 666,353 - GFF619 0.38 +1.8 666,353 - GFF619 0.38 -0.8 666,353 - GFF619 0.38 -0.6 666,353 - GFF619 0.38 -2.2 666,353 - GFF619 0.38 -0.8 666,394 + GFF619 0.41 +1.3 666,395 - GFF619 0.41 -3.5 666,472 + GFF619 0.47 -2.3 666,472 + GFF619 0.47 -1.0 666,472 + GFF619 0.47 -2.5 666,473 - GFF619 0.47 -0.6 666,473 - GFF619 0.47 +0.0 666,473 - GFF619 0.47 -1.9 666,604 + GFF619 0.58 -1.1 666,605 - GFF619 0.58 +0.1 666,632 - GFF619 0.60 -0.2
Or see this region's nucleotide sequence