Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6093 and GFF6094 overlap by 4 nucleotides GFF6094 and GFF6095 are separated by 14 nucleotides GFF6095 and GFF6096 overlap by 4 nucleotides GFF6096 and GFF6097 are separated by 15 nucleotides
GFF6093 - 1,2-phenylacetyl-CoA epoxidase, subunit A (EC 1.14.13.149), at 155,227 to 156,237
GFF6093
GFF6094 - 1,2-phenylacetyl-CoA epoxidase, subunit B (EC 1.14.13.149), at 156,234 to 156,530
GFF6094
GFF6095 - 1,2-phenylacetyl-CoA epoxidase, subunit C (EC 1.14.13.149), at 156,545 to 157,324
GFF6095
GFF6096 - 1,2-phenylacetyl-CoA epoxidase, subunit D (EC 1.14.13.149), at 157,321 to 157,845
GFF6096
GFF6097 - 1,2-phenylacetyl-CoA epoxidase, subunit E (EC 1.14.13.149), at 157,861 to 158,946
GFF6097
Position (kb) 156
157
158 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 155.614 kb on + strand, within GFF6093 at 155.615 kb on - strand, within GFF6093 at 155.615 kb on - strand, within GFF6093 at 155.725 kb on + strand, within GFF6093 at 156.369 kb on + strand, within GFF6094 at 156.369 kb on + strand, within GFF6094 at 156.370 kb on - strand, within GFF6094 at 156.481 kb on - strand, within GFF6094 at 156.499 kb on - strand, within GFF6094 at 156.499 kb on - strand, within GFF6094 at 156.587 kb on + strand at 156.588 kb on - strand at 156.806 kb on + strand, within GFF6095 at 156.807 kb on - strand, within GFF6095 at 157.070 kb on + strand, within GFF6095 at 157.070 kb on + strand, within GFF6095 at 157.071 kb on - strand, within GFF6095 at 157.071 kb on - strand, within GFF6095 at 157.071 kb on - strand, within GFF6095 at 157.071 kb on - strand, within GFF6095 at 157.268 kb on + strand at 157.268 kb on + strand at 157.268 kb on + strand at 157.268 kb on + strand at 157.269 kb on - strand at 157.269 kb on - strand at 157.474 kb on + strand, within GFF6096 at 157.628 kb on - strand, within GFF6096 at 157.795 kb on + strand at 157.795 kb on + strand at 157.843 kb on + strand at 157.843 kb on + strand at 157.844 kb on - strand at 157.844 kb on - strand at 157.984 kb on + strand, within GFF6097 at 158.303 kb on - strand, within GFF6097
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 155,614 + GFF6093 0.38 -3.4 155,615 - GFF6093 0.38 -1.4 155,615 - GFF6093 0.38 -1.3 155,725 + GFF6093 0.49 -3.9 156,369 + GFF6094 0.45 -1.4 156,369 + GFF6094 0.45 -2.5 156,370 - GFF6094 0.46 -0.2 156,481 - GFF6094 0.83 -2.0 156,499 - GFF6094 0.89 -3.0 156,499 - GFF6094 0.89 +0.4 156,587 + -1.0 156,588 - +1.1 156,806 + GFF6095 0.33 -0.2 156,807 - GFF6095 0.34 +0.6 157,070 + GFF6095 0.67 +0.9 157,070 + GFF6095 0.67 +2.2 157,071 - GFF6095 0.67 -1.9 157,071 - GFF6095 0.67 +1.2 157,071 - GFF6095 0.67 +1.4 157,071 - GFF6095 0.67 +1.6 157,268 + -0.2 157,268 + -0.2 157,268 + +1.7 157,268 + +1.4 157,269 - -1.0 157,269 - -1.8 157,474 + GFF6096 0.29 -1.9 157,628 - GFF6096 0.58 +0.2 157,795 + -1.5 157,795 + -1.5 157,843 + +0.9 157,843 + -0.6 157,844 - -0.1 157,844 - -0.2 157,984 + GFF6097 0.11 +0.6 158,303 - GFF6097 0.41 -0.7
Or see this region's nucleotide sequence