Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6084 and GFF6085 overlap by 4 nucleotides GFF6085 and GFF6086 are separated by 81 nucleotides GFF6086 and GFF6087 overlap by 19 nucleotides GFF6087 and GFF6088 are separated by 68 nucleotides
GFF6084 - Aerotolerance protein BatA, at 146,106 to 147,143
GFF6084
GFF6085 - Transcriptional regulator, AcrR family, at 147,140 to 147,727
GFF6085
GFF6086 - Putative short-chain dehydrogenase, at 147,809 to 148,660
GFF6086
GFF6087 - Transcriptional regulator, AcrR family, at 148,642 to 149,316
GFF6087
GFF6088 - Phenylacetic acid degradation protein PaaY, at 149,385 to 149,987
GFF6088
Position (kb) 147
148
149 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 146.853 kb on + strand, within GFF6084 at 146.853 kb on + strand, within GFF6084 at 146.853 kb on + strand, within GFF6084 at 146.854 kb on - strand, within GFF6084 at 146.854 kb on - strand, within GFF6084 at 146.854 kb on - strand, within GFF6084 at 146.970 kb on + strand, within GFF6084 at 146.971 kb on - strand, within GFF6084 at 146.971 kb on - strand, within GFF6084 at 146.971 kb on - strand, within GFF6084 at 146.976 kb on + strand, within GFF6084 at 146.976 kb on + strand, within GFF6084 at 146.976 kb on + strand, within GFF6084 at 146.977 kb on - strand, within GFF6084 at 146.977 kb on - strand, within GFF6084 at 147.009 kb on + strand, within GFF6084 at 147.141 kb on + strand at 147.250 kb on - strand, within GFF6085 at 147.250 kb on - strand, within GFF6085 at 147.269 kb on + strand, within GFF6085 at 147.270 kb on - strand, within GFF6085 at 147.270 kb on - strand, within GFF6085 at 147.357 kb on + strand, within GFF6085 at 147.358 kb on - strand, within GFF6085 at 147.358 kb on - strand, within GFF6085 at 147.462 kb on + strand, within GFF6085 at 147.462 kb on + strand, within GFF6085 at 147.462 kb on + strand, within GFF6085 at 147.462 kb on + strand, within GFF6085 at 147.462 kb on + strand, within GFF6085 at 147.462 kb on + strand, within GFF6085 at 147.463 kb on - strand, within GFF6085 at 147.463 kb on - strand, within GFF6085 at 147.463 kb on - strand, within GFF6085 at 147.463 kb on - strand, within GFF6085 at 147.463 kb on - strand, within GFF6085 at 147.463 kb on - strand, within GFF6085 at 147.474 kb on + strand, within GFF6085 at 147.475 kb on - strand, within GFF6085 at 147.475 kb on - strand, within GFF6085 at 147.475 kb on - strand, within GFF6085 at 147.475 kb on - strand, within GFF6085 at 147.475 kb on - strand, within GFF6085 at 147.475 kb on - strand, within GFF6085 at 147.475 kb on - strand, within GFF6085 at 147.588 kb on + strand, within GFF6085 at 147.588 kb on + strand, within GFF6085 at 147.588 kb on + strand, within GFF6085 at 147.588 kb on + strand, within GFF6085 at 147.589 kb on - strand, within GFF6085 at 147.589 kb on - strand, within GFF6085 at 147.589 kb on - strand, within GFF6085 at 147.589 kb on - strand, within GFF6085 at 147.750 kb on + strand at 147.750 kb on + strand at 147.750 kb on + strand at 147.838 kb on + strand at 147.839 kb on - strand at 147.839 kb on - strand at 147.839 kb on - strand at 147.839 kb on - strand at 147.923 kb on + strand, within GFF6086 at 147.923 kb on + strand, within GFF6086 at 147.924 kb on - strand, within GFF6086 at 147.924 kb on - strand, within GFF6086 at 147.924 kb on - strand, within GFF6086 at 147.924 kb on - strand, within GFF6086 at 148.020 kb on - strand, within GFF6086 at 148.322 kb on + strand, within GFF6086 at 148.322 kb on + strand, within GFF6086 at 148.322 kb on + strand, within GFF6086 at 148.322 kb on + strand, within GFF6086 at 148.323 kb on - strand, within GFF6086 at 148.323 kb on - strand, within GFF6086 at 148.323 kb on - strand, within GFF6086 at 148.323 kb on - strand, within GFF6086 at 148.643 kb on + strand at 148.643 kb on + strand at 148.644 kb on - strand at 148.705 kb on + strand at 148.706 kb on - strand at 148.715 kb on + strand, within GFF6087 at 148.716 kb on - strand, within GFF6087 at 149.021 kb on + strand, within GFF6087 at 149.021 kb on + strand, within GFF6087 at 149.021 kb on + strand, within GFF6087 at 149.022 kb on - strand, within GFF6087 at 149.022 kb on - strand, within GFF6087 at 149.039 kb on + strand, within GFF6087 at 149.040 kb on - strand, within GFF6087 at 149.040 kb on - strand, within GFF6087 at 149.162 kb on + strand, within GFF6087 at 149.162 kb on + strand, within GFF6087 at 149.162 kb on + strand, within GFF6087 at 149.162 kb on + strand, within GFF6087 at 149.162 kb on + strand, within GFF6087 at 149.163 kb on - strand, within GFF6087 at 149.163 kb on - strand, within GFF6087 at 149.163 kb on - strand, within GFF6087 at 149.163 kb on - strand, within GFF6087 at 149.163 kb on - strand, within GFF6087 at 149.163 kb on - strand, within GFF6087 at 149.165 kb on + strand, within GFF6087 at 149.165 kb on + strand, within GFF6087 at 149.166 kb on - strand, within GFF6087 at 149.166 kb on - strand, within GFF6087 at 149.166 kb on - strand, within GFF6087 at 149.166 kb on - strand, within GFF6087 at 149.171 kb on + strand, within GFF6087 at 149.171 kb on + strand, within GFF6087 at 149.171 kb on + strand, within GFF6087 at 149.172 kb on - strand, within GFF6087 at 149.172 kb on - strand, within GFF6087 at 149.291 kb on + strand at 149.292 kb on - strand at 149.292 kb on - strand at 149.337 kb on + strand at 149.337 kb on + strand at 149.337 kb on + strand at 149.337 kb on + strand at 149.337 kb on + strand at 149.337 kb on + strand at 149.337 kb on + strand at 149.338 kb on - strand at 149.338 kb on - strand at 149.338 kb on - strand at 149.338 kb on - strand at 149.338 kb on - strand at 149.512 kb on + strand, within GFF6088 at 149.512 kb on + strand, within GFF6088 at 149.513 kb on - strand, within GFF6088 at 149.513 kb on - strand, within GFF6088
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 146,853 + GFF6084 0.72 -0.0 146,853 + GFF6084 0.72 -1.9 146,853 + GFF6084 0.72 +2.3 146,854 - GFF6084 0.72 -1.0 146,854 - GFF6084 0.72 -0.6 146,854 - GFF6084 0.72 +0.4 146,970 + GFF6084 0.83 -2.0 146,971 - GFF6084 0.83 -1.2 146,971 - GFF6084 0.83 +1.5 146,971 - GFF6084 0.83 -0.8 146,976 + GFF6084 0.84 +0.8 146,976 + GFF6084 0.84 -2.2 146,976 + GFF6084 0.84 -1.2 146,977 - GFF6084 0.84 -3.2 146,977 - GFF6084 0.84 +0.6 147,009 + GFF6084 0.87 -2.2 147,141 + -1.3 147,250 - GFF6085 0.19 -0.6 147,250 - GFF6085 0.19 +1.2 147,269 + GFF6085 0.22 +1.2 147,270 - GFF6085 0.22 -0.8 147,270 - GFF6085 0.22 +0.3 147,357 + GFF6085 0.37 -1.9 147,358 - GFF6085 0.37 +2.2 147,358 - GFF6085 0.37 -1.0 147,462 + GFF6085 0.55 -2.5 147,462 + GFF6085 0.55 +2.2 147,462 + GFF6085 0.55 -0.6 147,462 + GFF6085 0.55 -3.4 147,462 + GFF6085 0.55 +0.3 147,462 + GFF6085 0.55 -1.5 147,463 - GFF6085 0.55 +0.2 147,463 - GFF6085 0.55 -0.4 147,463 - GFF6085 0.55 +0.2 147,463 - GFF6085 0.55 +0.4 147,463 - GFF6085 0.55 -2.4 147,463 - GFF6085 0.55 -0.2 147,474 + GFF6085 0.57 -0.4 147,475 - GFF6085 0.57 -1.7 147,475 - GFF6085 0.57 -0.4 147,475 - GFF6085 0.57 +2.7 147,475 - GFF6085 0.57 -0.6 147,475 - GFF6085 0.57 -1.5 147,475 - GFF6085 0.57 +0.8 147,475 - GFF6085 0.57 -0.2 147,588 + GFF6085 0.76 -0.2 147,588 + GFF6085 0.76 +0.0 147,588 + GFF6085 0.76 -1.2 147,588 + GFF6085 0.76 +0.7 147,589 - GFF6085 0.76 -1.2 147,589 - GFF6085 0.76 -0.0 147,589 - GFF6085 0.76 +0.0 147,589 - GFF6085 0.76 -0.3 147,750 + -2.5 147,750 + +1.2 147,750 + -2.2 147,838 + +0.7 147,839 - +0.3 147,839 - +0.8 147,839 - -1.3 147,839 - +0.3 147,923 + GFF6086 0.13 +0.1 147,923 + GFF6086 0.13 +0.5 147,924 - GFF6086 0.13 +0.7 147,924 - GFF6086 0.13 +0.3 147,924 - GFF6086 0.13 -2.3 147,924 - GFF6086 0.13 +1.4 148,020 - GFF6086 0.25 +1.9 148,322 + GFF6086 0.60 -2.9 148,322 + GFF6086 0.60 -2.3 148,322 + GFF6086 0.60 -2.5 148,322 + GFF6086 0.60 +5.0 148,323 - GFF6086 0.60 +1.4 148,323 - GFF6086 0.60 +2.2 148,323 - GFF6086 0.60 -0.8 148,323 - GFF6086 0.60 -0.2 148,643 + +0.6 148,643 + -1.2 148,644 - +0.4 148,705 + +0.9 148,706 - -1.2 148,715 + GFF6087 0.11 -0.7 148,716 - GFF6087 0.11 -0.9 149,021 + GFF6087 0.56 -1.4 149,021 + GFF6087 0.56 -0.2 149,021 + GFF6087 0.56 +0.7 149,022 - GFF6087 0.56 -3.2 149,022 - GFF6087 0.56 -0.3 149,039 + GFF6087 0.59 -0.2 149,040 - GFF6087 0.59 -0.8 149,040 - GFF6087 0.59 -3.0 149,162 + GFF6087 0.77 -3.4 149,162 + GFF6087 0.77 -1.0 149,162 + GFF6087 0.77 -0.4 149,162 + GFF6087 0.77 +0.2 149,162 + GFF6087 0.77 +0.6 149,163 - GFF6087 0.77 -2.3 149,163 - GFF6087 0.77 -1.5 149,163 - GFF6087 0.77 -0.0 149,163 - GFF6087 0.77 -1.6 149,163 - GFF6087 0.77 -0.6 149,163 - GFF6087 0.77 -2.6 149,165 + GFF6087 0.77 -1.4 149,165 + GFF6087 0.77 -0.5 149,166 - GFF6087 0.78 -3.3 149,166 - GFF6087 0.78 -3.0 149,166 - GFF6087 0.78 -2.4 149,166 - GFF6087 0.78 -2.7 149,171 + GFF6087 0.78 -1.4 149,171 + GFF6087 0.78 -2.6 149,171 + GFF6087 0.78 -1.0 149,172 - GFF6087 0.79 -2.1 149,172 - GFF6087 0.79 +0.9 149,291 + -1.8 149,292 - -0.8 149,292 - +0.5 149,337 + -0.9 149,337 + +1.2 149,337 + -1.5 149,337 + -0.4 149,337 + -1.4 149,337 + -0.1 149,337 + -0.2 149,338 - -2.5 149,338 - +0.7 149,338 - +0.6 149,338 - -0.8 149,338 - -2.2 149,512 + GFF6088 0.21 -0.2 149,512 + GFF6088 0.21 +0.0 149,513 - GFF6088 0.21 -0.8 149,513 - GFF6088 0.21 -1.0
Or see this region's nucleotide sequence