Strain Fitness in Variovorax sp. SCN45 around GFF6066

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6064 and GFF6065 overlap by 47 nucleotidesGFF6065 and GFF6066 are separated by 121 nucleotidesGFF6066 and GFF6067 are separated by 102 nucleotides GFF6064 - Transcriptional regulator YfeR, LysR family, at 126,292 to 127,221 GFF6064 GFF6065 - Two-component transcriptional response regulator receiver domain, at 127,175 to 127,600 GFF6065 GFF6066 - Quinone oxidoreductase (EC 1.6.5.5), at 127,722 to 128,708 GFF6066 GFF6067 - Permease of the drug/metabolite transporter (DMT) superfamily, at 128,811 to 129,719 GFF6067 Position (kb) 127 128 129Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 127.338 kb on + strand, within GFF6065at 127.338 kb on + strand, within GFF6065at 127.338 kb on + strand, within GFF6065at 127.338 kb on + strand, within GFF6065at 127.339 kb on - strand, within GFF6065at 127.339 kb on - strand, within GFF6065at 127.581 kb on + strandat 127.581 kb on + strandat 127.581 kb on + strandat 127.581 kb on + strandat 127.581 kb on + strandat 127.582 kb on - strandat 127.582 kb on - strandat 127.582 kb on - strandat 127.582 kb on - strandat 127.582 kb on - strandat 127.582 kb on - strandat 127.633 kb on + strandat 127.633 kb on + strandat 127.634 kb on - strandat 127.634 kb on - strandat 127.634 kb on - strandat 127.681 kb on + strandat 127.801 kb on + strandat 127.802 kb on - strandat 127.802 kb on - strandat 127.802 kb on - strandat 127.802 kb on - strandat 127.921 kb on + strand, within GFF6066at 127.921 kb on + strand, within GFF6066at 127.921 kb on + strand, within GFF6066at 127.922 kb on - strand, within GFF6066at 127.922 kb on - strand, within GFF6066at 127.922 kb on - strand, within GFF6066at 127.922 kb on - strand, within GFF6066at 128.059 kb on + strand, within GFF6066at 128.059 kb on + strand, within GFF6066at 128.059 kb on + strand, within GFF6066at 128.059 kb on + strand, within GFF6066at 128.059 kb on + strand, within GFF6066at 128.060 kb on - strand, within GFF6066at 128.060 kb on - strand, within GFF6066at 128.125 kb on + strand, within GFF6066at 128.125 kb on + strand, within GFF6066at 128.126 kb on - strand, within GFF6066at 128.126 kb on - strand, within GFF6066at 128.126 kb on - strand, within GFF6066at 128.126 kb on - strand, within GFF6066at 128.126 kb on - strand, within GFF6066at 128.320 kb on + strand, within GFF6066at 128.320 kb on + strand, within GFF6066at 128.320 kb on + strand, within GFF6066at 128.321 kb on - strand, within GFF6066at 128.321 kb on - strand, within GFF6066at 128.321 kb on - strand, within GFF6066at 128.321 kb on - strand, within GFF6066at 128.425 kb on + strand, within GFF6066at 128.552 kb on - strand, within GFF6066at 128.552 kb on - strand, within GFF6066at 128.552 kb on - strand, within GFF6066at 128.552 kb on - strand, within GFF6066at 128.569 kb on + strand, within GFF6066at 128.570 kb on - strand, within GFF6066at 128.570 kb on - strand, within GFF6066at 128.570 kb on - strand, within GFF6066at 128.688 kb on - strandat 128.798 kb on - strandat 129.033 kb on + strand, within GFF6067at 129.033 kb on + strand, within GFF6067at 129.066 kb on + strand, within GFF6067at 129.066 kb on + strand, within GFF6067at 129.066 kb on + strand, within GFF6067at 129.067 kb on - strand, within GFF6067at 129.067 kb on - strand, within GFF6067at 129.297 kb on + strand, within GFF6067at 129.297 kb on + strand, within GFF6067at 129.297 kb on + strand, within GFF6067at 129.297 kb on + strand, within GFF6067at 129.297 kb on + strand, within GFF6067at 129.297 kb on + strand, within GFF6067at 129.298 kb on - strand, within GFF6067at 129.298 kb on - strand, within GFF6067at 129.298 kb on - strand, within GFF6067at 129.298 kb on - strand, within GFF6067at 129.298 kb on - strand, within GFF6067at 129.298 kb on - strand, within GFF6067at 129.298 kb on - strand, within GFF6067at 129.298 kb on - strand, within GFF6067at 129.298 kb on - strand, within GFF6067at 129.298 kb on - strand, within GFF6067at 129.330 kb on + strand, within GFF6067at 129.330 kb on + strand, within GFF6067at 129.330 kb on + strand, within GFF6067at 129.330 kb on + strand, within GFF6067at 129.331 kb on - strand, within GFF6067at 129.331 kb on - strand, within GFF6067at 129.331 kb on - strand, within GFF6067at 129.331 kb on - strand, within GFF6067at 129.331 kb on - strand, within GFF6067at 129.331 kb on - strand, within GFF6067at 129.331 kb on - strand, within GFF6067at 129.331 kb on - strand, within GFF6067at 129.538 kb on - strand, within GFF6067at 129.538 kb on - strand, within GFF6067at 129.660 kb on + strandat 129.660 kb on + strandat 129.660 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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127,338 + GFF6065 0.38 -1.5
127,338 + GFF6065 0.38 +1.0
127,338 + GFF6065 0.38 -0.2
127,338 + GFF6065 0.38 -1.1
127,339 - GFF6065 0.38 -2.3
127,339 - GFF6065 0.38 -0.6
127,581 + -1.4
127,581 + +0.4
127,581 + -1.2
127,581 + +0.8
127,581 + +0.2
127,582 - -1.5
127,582 - +2.0
127,582 - -0.9
127,582 - +0.5
127,582 - -2.2
127,582 - +0.4
127,633 + -1.7
127,633 + -1.8
127,634 - +0.5
127,634 - -0.4
127,634 - +0.6
127,681 + -2.7
127,801 + -1.9
127,802 - -0.4
127,802 - -3.2
127,802 - -1.9
127,802 - -0.6
127,921 + GFF6066 0.20 +1.2
127,921 + GFF6066 0.20 +0.2
127,921 + GFF6066 0.20 -2.8
127,922 - GFF6066 0.20 +0.6
127,922 - GFF6066 0.20 -1.3
127,922 - GFF6066 0.20 -2.6
127,922 - GFF6066 0.20 +0.4
128,059 + GFF6066 0.34 -0.3
128,059 + GFF6066 0.34 -1.6
128,059 + GFF6066 0.34 -0.3
128,059 + GFF6066 0.34 +0.2
128,059 + GFF6066 0.34 -1.0
128,060 - GFF6066 0.34 -2.2
128,060 - GFF6066 0.34 +0.7
128,125 + GFF6066 0.41 -0.3
128,125 + GFF6066 0.41 -1.6
128,126 - GFF6066 0.41 -1.0
128,126 - GFF6066 0.41 +1.7
128,126 - GFF6066 0.41 -0.6
128,126 - GFF6066 0.41 +1.6
128,126 - GFF6066 0.41 -2.3
128,320 + GFF6066 0.61 +0.1
128,320 + GFF6066 0.61 -1.3
128,320 + GFF6066 0.61 +2.0
128,321 - GFF6066 0.61 -1.2
128,321 - GFF6066 0.61 -2.7
128,321 - GFF6066 0.61 -2.8
128,321 - GFF6066 0.61 -0.2
128,425 + GFF6066 0.71 -1.3
128,552 - GFF6066 0.84 -1.6
128,552 - GFF6066 0.84 -0.5
128,552 - GFF6066 0.84 -0.2
128,552 - GFF6066 0.84 +0.1
128,569 + GFF6066 0.86 -1.2
128,570 - GFF6066 0.86 -0.6
128,570 - GFF6066 0.86 +0.8
128,570 - GFF6066 0.86 +1.0
128,688 - -0.4
128,798 - -2.3
129,033 + GFF6067 0.24 +0.4
129,033 + GFF6067 0.24 -0.6
129,066 + GFF6067 0.28 +1.3
129,066 + GFF6067 0.28 -0.3
129,066 + GFF6067 0.28 -1.6
129,067 - GFF6067 0.28 -0.0
129,067 - GFF6067 0.28 -1.2
129,297 + GFF6067 0.53 +0.0
129,297 + GFF6067 0.53 -1.2
129,297 + GFF6067 0.53 -0.2
129,297 + GFF6067 0.53 -0.8
129,297 + GFF6067 0.53 +0.1
129,297 + GFF6067 0.53 +0.5
129,298 - GFF6067 0.54 +0.3
129,298 - GFF6067 0.54 +0.1
129,298 - GFF6067 0.54 -0.2
129,298 - GFF6067 0.54 -0.7
129,298 - GFF6067 0.54 +2.2
129,298 - GFF6067 0.54 -0.0
129,298 - GFF6067 0.54 -1.7
129,298 - GFF6067 0.54 -0.8
129,298 - GFF6067 0.54 -3.0
129,298 - GFF6067 0.54 -0.7
129,330 + GFF6067 0.57 +2.9
129,330 + GFF6067 0.57 +0.8
129,330 + GFF6067 0.57 -0.9
129,330 + GFF6067 0.57 -0.5
129,331 - GFF6067 0.57 -0.9
129,331 - GFF6067 0.57 -1.6
129,331 - GFF6067 0.57 -0.4
129,331 - GFF6067 0.57 -0.0
129,331 - GFF6067 0.57 +0.4
129,331 - GFF6067 0.57 -0.6
129,331 - GFF6067 0.57 -0.3
129,331 - GFF6067 0.57 -0.8
129,538 - GFF6067 0.80 +0.7
129,538 - GFF6067 0.80 -0.1
129,660 + +1.2
129,660 + -0.5
129,660 + -1.3

Or see this region's nucleotide sequence