Strain Fitness in Variovorax sp. SCN45 around GFF5973

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5971 and GFF5972 are separated by 24 nucleotidesGFF5972 and GFF5973 are separated by 134 nucleotidesGFF5973 and GFF5974 are separated by 118 nucleotidesGFF5974 and GFF5975 are separated by 10 nucleotides GFF5971 - hypothetical protein, at 26,071 to 26,871 GFF5971 GFF5972 - ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA, at 26,896 to 27,540 GFF5972 GFF5973 - Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42), at 27,675 to 29,912 GFF5973 GFF5974 - hypothetical protein, at 30,031 to 30,378 GFF5974 GFF5975 - Two-component transcriptional response regulator, LuxR family, at 30,389 to 30,964 GFF5975 Position (kb) 27 28 29 30Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 26.856 kb on + strandat 26.856 kb on + strandat 26.857 kb on - strandat 26.857 kb on - strandat 26.857 kb on - strandat 26.884 kb on - strandat 27.516 kb on + strandat 27.516 kb on + strandat 27.516 kb on + strandat 27.517 kb on - strandat 27.660 kb on + strandat 27.661 kb on - strandat 27.702 kb on + strandat 27.702 kb on + strandat 27.702 kb on + strandat 27.702 kb on + strandat 27.703 kb on - strandat 27.703 kb on - strandat 27.703 kb on - strandat 27.703 kb on - strandat 27.738 kb on + strandat 27.738 kb on + strandat 27.738 kb on + strandat 27.739 kb on - strandat 27.739 kb on - strandat 27.739 kb on - strandat 27.994 kb on - strand, within GFF5973at 27.994 kb on - strand, within GFF5973at 27.994 kb on - strand, within GFF5973at 27.994 kb on - strand, within GFF5973at 28.056 kb on + strand, within GFF5973at 28.057 kb on - strand, within GFF5973at 28.225 kb on - strand, within GFF5973at 28.225 kb on - strand, within GFF5973at 28.225 kb on - strand, within GFF5973at 28.225 kb on - strand, within GFF5973at 28.386 kb on + strand, within GFF5973at 28.386 kb on + strand, within GFF5973at 28.386 kb on + strand, within GFF5973at 28.386 kb on + strand, within GFF5973at 28.387 kb on - strand, within GFF5973at 28.387 kb on - strand, within GFF5973at 28.387 kb on - strand, within GFF5973at 28.387 kb on - strand, within GFF5973at 28.503 kb on + strand, within GFF5973at 28.503 kb on + strand, within GFF5973at 28.503 kb on + strand, within GFF5973at 28.503 kb on + strand, within GFF5973at 28.503 kb on + strand, within GFF5973at 28.503 kb on + strand, within GFF5973at 28.581 kb on + strand, within GFF5973at 28.581 kb on + strand, within GFF5973at 28.581 kb on + strand, within GFF5973at 28.582 kb on - strand, within GFF5973at 28.582 kb on - strand, within GFF5973at 28.836 kb on + strand, within GFF5973at 28.836 kb on + strand, within GFF5973at 28.836 kb on + strand, within GFF5973at 28.837 kb on - strand, within GFF5973at 28.837 kb on - strand, within GFF5973at 28.837 kb on - strand, within GFF5973at 28.837 kb on - strand, within GFF5973at 28.938 kb on + strand, within GFF5973at 28.939 kb on - strand, within GFF5973at 28.939 kb on - strand, within GFF5973at 29.196 kb on + strand, within GFF5973at 29.196 kb on + strand, within GFF5973at 29.196 kb on + strand, within GFF5973at 29.196 kb on + strand, within GFF5973at 29.196 kb on + strand, within GFF5973at 29.197 kb on - strand, within GFF5973at 29.197 kb on - strand, within GFF5973at 29.197 kb on - strand, within GFF5973at 29.197 kb on - strand, within GFF5973at 29.197 kb on - strand, within GFF5973at 29.197 kb on - strand, within GFF5973at 29.197 kb on - strand, within GFF5973at 29.262 kb on + strand, within GFF5973at 29.328 kb on + strand, within GFF5973at 29.329 kb on - strand, within GFF5973at 29.415 kb on + strand, within GFF5973at 29.416 kb on - strand, within GFF5973at 29.416 kb on - strand, within GFF5973at 29.667 kb on + strand, within GFF5973at 29.667 kb on + strand, within GFF5973at 29.667 kb on + strand, within GFF5973at 29.667 kb on + strand, within GFF5973at 29.667 kb on + strand, within GFF5973at 29.668 kb on - strand, within GFF5973at 29.668 kb on - strand, within GFF5973at 29.668 kb on - strand, within GFF5973at 29.668 kb on - strand, within GFF5973at 29.668 kb on - strand, within GFF5973at 29.679 kb on + strand, within GFF5973at 29.679 kb on + strand, within GFF5973at 29.679 kb on + strand, within GFF5973at 29.679 kb on + strand, within GFF5973at 29.679 kb on + strand, within GFF5973at 29.679 kb on + strand, within GFF5973at 29.680 kb on - strand, within GFF5973at 29.680 kb on - strand, within GFF5973at 29.680 kb on - strand, within GFF5973at 29.680 kb on - strand, within GFF5973at 29.680 kb on - strand, within GFF5973at 29.680 kb on - strand, within GFF5973at 29.680 kb on - strand, within GFF5973at 29.680 kb on - strand, within GFF5973at 29.680 kb on - strand, within GFF5973at 29.826 kb on + strandat 29.827 kb on - strandat 29.829 kb on + strandat 29.829 kb on + strandat 29.830 kb on - strandat 29.830 kb on - strandat 29.830 kb on - strandat 29.830 kb on - strandat 29.830 kb on - strandat 29.991 kb on + strandat 29.991 kb on + strandat 29.991 kb on + strandat 29.991 kb on + strandat 29.991 kb on + strandat 29.991 kb on + strandat 29.991 kb on + strandat 29.991 kb on + strandat 29.991 kb on + strandat 29.992 kb on - strandat 29.992 kb on - strandat 29.992 kb on - strandat 29.992 kb on - strandat 29.992 kb on - strandat 29.992 kb on - strandat 29.992 kb on - strandat 30.037 kb on + strandat 30.037 kb on + strandat 30.037 kb on + strandat 30.037 kb on + strandat 30.038 kb on + strandat 30.038 kb on - strandat 30.038 kb on - strandat 30.238 kb on + strand, within GFF5974at 30.239 kb on - strand, within GFF5974at 30.239 kb on - strand, within GFF5974at 30.377 kb on - strandat 30.480 kb on + strand, within GFF5975at 30.480 kb on + strand, within GFF5975at 30.480 kb on + strand, within GFF5975at 30.480 kb on + strand, within GFF5975at 30.481 kb on - strand, within GFF5975at 30.481 kb on - strand, within GFF5975at 30.481 kb on - strand, within GFF5975at 30.523 kb on - strand, within GFF5975at 30.523 kb on - strand, within GFF5975at 30.523 kb on - strand, within GFF5975at 30.523 kb on - strand, within GFF5975at 30.755 kb on - strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.855 kb on + strand, within GFF5975at 30.856 kb on - strand, within GFF5975at 30.856 kb on - strand, within GFF5975at 30.856 kb on - strand, within GFF5975

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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26,856 + +2.2
26,856 + +0.5
26,857 - -0.7
26,857 - +1.4
26,857 - +0.4
26,884 - -0.2
27,516 + +0.2
27,516 + +0.6
27,516 + -2.6
27,517 - +1.2
27,660 + -0.0
27,661 - -1.0
27,702 + +0.7
27,702 + +0.6
27,702 + +1.8
27,702 + -1.2
27,703 - +0.8
27,703 - -2.4
27,703 - -0.6
27,703 - +0.5
27,738 + -0.2
27,738 + -0.2
27,738 + -1.0
27,739 - +0.6
27,739 - -0.7
27,739 - -0.3
27,994 - GFF5973 0.14 -1.0
27,994 - GFF5973 0.14 -0.3
27,994 - GFF5973 0.14 -1.0
27,994 - GFF5973 0.14 +1.2
28,056 + GFF5973 0.17 +0.2
28,057 - GFF5973 0.17 -2.1
28,225 - GFF5973 0.25 +0.3
28,225 - GFF5973 0.25 -2.2
28,225 - GFF5973 0.25 -0.2
28,225 - GFF5973 0.25 -2.6
28,386 + GFF5973 0.32 -0.7
28,386 + GFF5973 0.32 -2.7
28,386 + GFF5973 0.32 -1.7
28,386 + GFF5973 0.32 -1.4
28,387 - GFF5973 0.32 +3.2
28,387 - GFF5973 0.32 -1.2
28,387 - GFF5973 0.32 +2.2
28,387 - GFF5973 0.32 +0.2
28,503 + GFF5973 0.37 -1.7
28,503 + GFF5973 0.37 -1.1
28,503 + GFF5973 0.37 -0.4
28,503 + GFF5973 0.37 -0.4
28,503 + GFF5973 0.37 -1.5
28,503 + GFF5973 0.37 -1.9
28,581 + GFF5973 0.40 -2.6
28,581 + GFF5973 0.40 +2.2
28,581 + GFF5973 0.40 -2.9
28,582 - GFF5973 0.41 -0.6
28,582 - GFF5973 0.41 +0.6
28,836 + GFF5973 0.52 -0.8
28,836 + GFF5973 0.52 +1.5
28,836 + GFF5973 0.52 -3.2
28,837 - GFF5973 0.52 -0.1
28,837 - GFF5973 0.52 +1.0
28,837 - GFF5973 0.52 -0.6
28,837 - GFF5973 0.52 -0.6
28,938 + GFF5973 0.56 -3.6
28,939 - GFF5973 0.56 -0.5
28,939 - GFF5973 0.56 -0.2
29,196 + GFF5973 0.68 -1.8
29,196 + GFF5973 0.68 -0.5
29,196 + GFF5973 0.68 -0.8
29,196 + GFF5973 0.68 -0.1
29,196 + GFF5973 0.68 +1.5
29,197 - GFF5973 0.68 +0.2
29,197 - GFF5973 0.68 -0.4
29,197 - GFF5973 0.68 -1.3
29,197 - GFF5973 0.68 -3.4
29,197 - GFF5973 0.68 -1.9
29,197 - GFF5973 0.68 -0.1
29,197 - GFF5973 0.68 -1.4
29,262 + GFF5973 0.71 -0.2
29,328 + GFF5973 0.74 -0.0
29,329 - GFF5973 0.74 -1.6
29,415 + GFF5973 0.78 -2.3
29,416 - GFF5973 0.78 -0.6
29,416 - GFF5973 0.78 -1.6
29,667 + GFF5973 0.89 -1.6
29,667 + GFF5973 0.89 -0.8
29,667 + GFF5973 0.89 -3.0
29,667 + GFF5973 0.89 -0.2
29,667 + GFF5973 0.89 -0.8
29,668 - GFF5973 0.89 -1.4
29,668 - GFF5973 0.89 -1.5
29,668 - GFF5973 0.89 -0.4
29,668 - GFF5973 0.89 -1.5
29,668 - GFF5973 0.89 -2.1
29,679 + GFF5973 0.90 -0.4
29,679 + GFF5973 0.90 -1.6
29,679 + GFF5973 0.90 -1.5
29,679 + GFF5973 0.90 -1.5
29,679 + GFF5973 0.90 -1.4
29,679 + GFF5973 0.90 +0.1
29,680 - GFF5973 0.90 +1.8
29,680 - GFF5973 0.90 +1.0
29,680 - GFF5973 0.90 -1.5
29,680 - GFF5973 0.90 +0.2
29,680 - GFF5973 0.90 -1.4
29,680 - GFF5973 0.90 -1.0
29,680 - GFF5973 0.90 -1.7
29,680 - GFF5973 0.90 -1.3
29,680 - GFF5973 0.90 -1.5
29,826 + +0.1
29,827 - -0.2
29,829 + -0.6
29,829 + -2.8
29,830 - +1.2
29,830 - -2.5
29,830 - -1.4
29,830 - -2.7
29,830 - -1.2
29,991 + +2.0
29,991 + +0.2
29,991 + +0.0
29,991 + +1.2
29,991 + +0.7
29,991 + +0.6
29,991 + +0.2
29,991 + +0.2
29,991 + +1.2
29,992 - -1.6
29,992 - +0.9
29,992 - -2.0
29,992 - -0.5
29,992 - -0.1
29,992 - +0.2
29,992 - +0.3
30,037 + -2.0
30,037 + -2.0
30,037 + -1.3
30,037 + -1.3
30,038 + +1.6
30,038 - +1.4
30,038 - -0.5
30,238 + GFF5974 0.59 +0.7
30,239 - GFF5974 0.60 -2.3
30,239 - GFF5974 0.60 -1.2
30,377 - -0.2
30,480 + GFF5975 0.16 -1.7
30,480 + GFF5975 0.16 -0.1
30,480 + GFF5975 0.16 -0.6
30,480 + GFF5975 0.16 -0.9
30,481 - GFF5975 0.16 +2.2
30,481 - GFF5975 0.16 -0.4
30,481 - GFF5975 0.16 -1.0
30,523 - GFF5975 0.23 +2.3
30,523 - GFF5975 0.23 -1.2
30,523 - GFF5975 0.23 -0.8
30,523 - GFF5975 0.23 -1.1
30,755 - GFF5975 0.64 -1.0
30,855 + GFF5975 0.81 -1.3
30,855 + GFF5975 0.81 +1.4
30,855 + GFF5975 0.81 -2.6
30,855 + GFF5975 0.81 +0.2
30,855 + GFF5975 0.81 -1.0
30,855 + GFF5975 0.81 +2.2
30,855 + GFF5975 0.81 -1.0
30,855 + GFF5975 0.81 -1.6
30,855 + GFF5975 0.81 +0.7
30,855 + GFF5975 0.81 -0.0
30,855 + GFF5975 0.81 -1.1
30,855 + GFF5975 0.81 +1.8
30,855 + GFF5975 0.81 -1.4
30,855 + GFF5975 0.81 -3.3
30,856 - GFF5975 0.81 -0.2
30,856 - GFF5975 0.81 +0.2
30,856 - GFF5975 0.81 -0.9

Or see this region's nucleotide sequence