Strain Fitness in Variovorax sp. SCN45 around GFF5960

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
15,717	-		GFF5959	0.75	+1.0
15,717	-		GFF5959	0.75	-0.4
16,104	+				+0.8
16,271	-		GFF5960	0.27	-2.5
16,271	-		GFF5960	0.27	+1.3
16,392	+		GFF5960	0.47	-1.5
16,392	+		GFF5960	0.47	-1.2
16,462	+		GFF5960	0.58	-2.0
16,463	-		GFF5960	0.58	-1.7
16,803	+		GFF5961	0.18	-1.2
16,803	+		GFF5961	0.18	-1.9
16,803	+		GFF5961	0.18	-3.0
16,803	+		GFF5961	0.18	+1.6
16,804	-		GFF5961	0.18	-0.2
16,804	-		GFF5961	0.18	+0.7
16,804	-		GFF5961	0.18	-1.8
16,804	-		GFF5961	0.18	+1.1
17,113	-		GFF5961	0.80	-4.0
17,270	+				+1.7
17,271	-				+0.6
17,271	-				-0.8
17,561	-				-0.9
17,561	-				-0.6
17,622	+				-0.2
17,622	+				-1.8
17,622	+				+1.6
17,622	+				+2.0
17,622	+				+0.2
17,622	+				+1.0
17,622	+				+0.9
17,622	+				-2.5
17,623	-				+3.8
17,623	-				-2.1
17,623	-				+2.2