Strain Fitness in Variovorax sp. SCN45 around GFF5828

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5827 and GFF5828 overlap by 4 nucleotidesGFF5828 and GFF5829 are separated by 12 nucleotides GFF5827 - FIG00452956: hypothetical protein, at 2,981 to 4,054 GFF5827 GFF5828 - Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1), at 4,051 to 4,920 GFF5828 GFF5829 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 4,933 to 6,201 GFF5829 Position (kb) 4 5Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3.120 kb on + strand, within GFF5827at 3.121 kb on - strand, within GFF5827at 3.121 kb on - strand, within GFF5827at 3.201 kb on + strand, within GFF5827at 3.201 kb on + strand, within GFF5827at 3.201 kb on + strand, within GFF5827at 3.202 kb on - strand, within GFF5827at 3.202 kb on - strand, within GFF5827at 3.202 kb on - strand, within GFF5827at 3.202 kb on - strand, within GFF5827at 3.202 kb on - strand, within GFF5827at 3.202 kb on - strand, within GFF5827at 3.489 kb on + strand, within GFF5827at 3.490 kb on - strand, within GFF5827at 3.490 kb on - strand, within GFF5827at 3.490 kb on - strand, within GFF5827at 3.645 kb on + strand, within GFF5827at 3.645 kb on + strand, within GFF5827at 3.645 kb on + strand, within GFF5827at 3.646 kb on - strand, within GFF5827at 3.646 kb on - strand, within GFF5827at 3.795 kb on + strand, within GFF5827at 3.795 kb on + strand, within GFF5827at 4.306 kb on + strand, within GFF5828at 4.306 kb on + strand, within GFF5828at 4.307 kb on - strand, within GFF5828at 4.586 kb on + strand, within GFF5828at 4.778 kb on + strand, within GFF5828at 4.778 kb on + strand, within GFF5828at 4.778 kb on + strand, within GFF5828at 4.778 kb on + strand, within GFF5828at 4.835 kb on + strandat 4.835 kb on + strandat 4.869 kb on - strandat 4.910 kb on + strandat 4.934 kb on + strandat 4.935 kb on - strandat 4.935 kb on - strandat 4.935 kb on - strandat 5.090 kb on + strand, within GFF5829at 5.090 kb on + strand, within GFF5829at 5.090 kb on + strand, within GFF5829at 5.090 kb on + strand, within GFF5829at 5.090 kb on + strand, within GFF5829at 5.091 kb on - strand, within GFF5829at 5.091 kb on - strand, within GFF5829at 5.091 kb on - strand, within GFF5829at 5.220 kb on - strand, within GFF5829at 5.220 kb on - strand, within GFF5829at 5.220 kb on - strand, within GFF5829at 5.264 kb on + strand, within GFF5829at 5.264 kb on + strand, within GFF5829at 5.265 kb on - strand, within GFF5829at 5.265 kb on - strand, within GFF5829at 5.265 kb on - strand, within GFF5829at 5.265 kb on - strand, within GFF5829at 5.358 kb on - strand, within GFF5829at 5.390 kb on + strand, within GFF5829at 5.675 kb on + strand, within GFF5829at 5.675 kb on + strand, within GFF5829at 5.676 kb on - strand, within GFF5829at 5.690 kb on + strand, within GFF5829at 5.690 kb on + strand, within GFF5829at 5.691 kb on - strand, within GFF5829at 5.691 kb on - strand, within GFF5829at 5.691 kb on - strand, within GFF5829at 5.691 kb on - strand, within GFF5829at 5.691 kb on - strand, within GFF5829at 5.741 kb on + strand, within GFF5829at 5.741 kb on + strand, within GFF5829at 5.741 kb on + strand, within GFF5829at 5.742 kb on - strand, within GFF5829at 5.742 kb on - strand, within GFF5829at 5.742 kb on - strand, within GFF5829at 5.742 kb on - strand, within GFF5829at 5.810 kb on + strand, within GFF5829at 5.811 kb on - strand, within GFF5829at 5.896 kb on + strand, within GFF5829at 5.897 kb on - strand, within GFF5829at 5.897 kb on - strand, within GFF5829

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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3,120 + GFF5827 0.13 -0.9
3,121 - GFF5827 0.13 -1.6
3,121 - GFF5827 0.13 +0.8
3,201 + GFF5827 0.20 +0.6
3,201 + GFF5827 0.20 +0.9
3,201 + GFF5827 0.20 +1.4
3,202 - GFF5827 0.21 -1.5
3,202 - GFF5827 0.21 +0.4
3,202 - GFF5827 0.21 -0.9
3,202 - GFF5827 0.21 -0.6
3,202 - GFF5827 0.21 -1.0
3,202 - GFF5827 0.21 -1.0
3,489 + GFF5827 0.47 +0.7
3,490 - GFF5827 0.47 -0.7
3,490 - GFF5827 0.47 -0.8
3,490 - GFF5827 0.47 +3.9
3,645 + GFF5827 0.62 -0.4
3,645 + GFF5827 0.62 -1.5
3,645 + GFF5827 0.62 +1.4
3,646 - GFF5827 0.62 -1.5
3,646 - GFF5827 0.62 -0.3
3,795 + GFF5827 0.76 +1.4
3,795 + GFF5827 0.76 -0.6
4,306 + GFF5828 0.29 +1.0
4,306 + GFF5828 0.29 +0.4
4,307 - GFF5828 0.29 +1.4
4,586 + GFF5828 0.61 -1.6
4,778 + GFF5828 0.84 -1.1
4,778 + GFF5828 0.84 -2.4
4,778 + GFF5828 0.84 +0.7
4,778 + GFF5828 0.84 +1.3
4,835 + -1.1
4,835 + -3.3
4,869 - +0.7
4,910 + +0.6
4,934 + +0.4
4,935 - -0.6
4,935 - -0.3
4,935 - +3.1
5,090 + GFF5829 0.12 +0.4
5,090 + GFF5829 0.12 +1.2
5,090 + GFF5829 0.12 -0.1
5,090 + GFF5829 0.12 +0.4
5,090 + GFF5829 0.12 +1.1
5,091 - GFF5829 0.12 +0.1
5,091 - GFF5829 0.12 -1.6
5,091 - GFF5829 0.12 +1.4
5,220 - GFF5829 0.23 -1.6
5,220 - GFF5829 0.23 -0.1
5,220 - GFF5829 0.23 -1.4
5,264 + GFF5829 0.26 +0.1
5,264 + GFF5829 0.26 -1.0
5,265 - GFF5829 0.26 -3.3
5,265 - GFF5829 0.26 -0.1
5,265 - GFF5829 0.26 +1.6
5,265 - GFF5829 0.26 +2.3
5,358 - GFF5829 0.33 +0.5
5,390 + GFF5829 0.36 +0.1
5,675 + GFF5829 0.58 -3.0
5,675 + GFF5829 0.58 -0.8
5,676 - GFF5829 0.59 +0.2
5,690 + GFF5829 0.60 -1.3
5,690 + GFF5829 0.60 +0.0
5,691 - GFF5829 0.60 +0.2
5,691 - GFF5829 0.60 -0.7
5,691 - GFF5829 0.60 -0.6
5,691 - GFF5829 0.60 -2.4
5,691 - GFF5829 0.60 +0.4
5,741 + GFF5829 0.64 -1.2
5,741 + GFF5829 0.64 -0.3
5,741 + GFF5829 0.64 -0.2
5,742 - GFF5829 0.64 +2.4
5,742 - GFF5829 0.64 -0.6
5,742 - GFF5829 0.64 +0.1
5,742 - GFF5829 0.64 +0.7
5,810 + GFF5829 0.69 -1.1
5,811 - GFF5829 0.69 -1.0
5,896 + GFF5829 0.76 -0.2
5,897 - GFF5829 0.76 +0.1
5,897 - GFF5829 0.76 -0.2

Or see this region's nucleotide sequence