Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5785 and GFF5786 are separated by 142 nucleotides GFF5786 and GFF5787 are separated by 74 nucleotides
GFF5785 - FIG00931285: hypothetical protein, at 160,010 to 161,425
GFF5785
GFF5786 - Transcriptional regulator, LuxR family, at 161,568 to 162,170
GFF5786
GFF5787 - Tryptophanyl-tRNA synthetase (EC 6.1.1.2), at 162,245 to 163,576
GFF5787
Position (kb) 161
162
163 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 160.568 kb on + strand, within GFF5785 at 160.568 kb on + strand, within GFF5785 at 160.568 kb on + strand, within GFF5785 at 160.568 kb on + strand, within GFF5785 at 160.568 kb on + strand, within GFF5785 at 160.569 kb on - strand, within GFF5785 at 160.628 kb on - strand, within GFF5785 at 160.628 kb on - strand, within GFF5785 at 160.631 kb on + strand, within GFF5785 at 160.631 kb on + strand, within GFF5785 at 160.632 kb on - strand, within GFF5785 at 160.632 kb on - strand, within GFF5785 at 160.632 kb on - strand, within GFF5785 at 160.796 kb on + strand, within GFF5785 at 160.985 kb on + strand, within GFF5785 at 160.985 kb on + strand, within GFF5785 at 161.108 kb on + strand, within GFF5785 at 161.109 kb on - strand, within GFF5785 at 161.109 kb on - strand, within GFF5785 at 161.109 kb on - strand, within GFF5785 at 161.109 kb on - strand, within GFF5785 at 161.109 kb on - strand, within GFF5785 at 161.179 kb on + strand, within GFF5785 at 161.180 kb on - strand, within GFF5785 at 161.231 kb on + strand, within GFF5785 at 161.231 kb on + strand, within GFF5785 at 161.231 kb on + strand, within GFF5785 at 161.232 kb on - strand, within GFF5785 at 161.232 kb on - strand, within GFF5785 at 161.232 kb on - strand, within GFF5785 at 161.232 kb on - strand, within GFF5785 at 161.232 kb on - strand, within GFF5785 at 161.232 kb on - strand, within GFF5785 at 161.599 kb on + strand at 161.599 kb on + strand at 161.599 kb on + strand at 161.599 kb on + strand at 161.599 kb on + strand at 161.599 kb on + strand at 161.599 kb on + strand at 161.599 kb on + strand at 161.600 kb on - strand at 161.600 kb on - strand at 161.600 kb on - strand at 161.869 kb on + strand, within GFF5786 at 161.869 kb on + strand, within GFF5786 at 161.869 kb on + strand, within GFF5786 at 161.869 kb on + strand, within GFF5786 at 161.869 kb on + strand, within GFF5786 at 161.870 kb on - strand, within GFF5786 at 161.870 kb on - strand, within GFF5786 at 161.870 kb on - strand, within GFF5786 at 161.870 kb on - strand, within GFF5786 at 161.870 kb on - strand, within GFF5786 at 161.870 kb on - strand, within GFF5786 at 161.870 kb on - strand, within GFF5786 at 161.870 kb on - strand, within GFF5786 at 161.870 kb on - strand, within GFF5786 at 161.870 kb on - strand, within GFF5786 at 161.930 kb on - strand, within GFF5786 at 161.930 kb on - strand, within GFF5786 at 162.160 kb on + strand at 162.160 kb on + strand at 162.160 kb on + strand at 162.160 kb on + strand at 162.161 kb on - strand at 162.161 kb on - strand at 162.161 kb on - strand at 162.161 kb on - strand at 162.161 kb on - strand at 162.161 kb on - strand at 162.161 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 160,568 + GFF5785 0.39 +0.9 160,568 + GFF5785 0.39 +0.3 160,568 + GFF5785 0.39 +1.8 160,568 + GFF5785 0.39 +0.6 160,568 + GFF5785 0.39 -2.7 160,569 - GFF5785 0.39 -1.3 160,628 - GFF5785 0.44 -1.4 160,628 - GFF5785 0.44 -0.5 160,631 + GFF5785 0.44 -0.6 160,631 + GFF5785 0.44 -1.0 160,632 - GFF5785 0.44 +0.5 160,632 - GFF5785 0.44 -2.8 160,632 - GFF5785 0.44 -1.7 160,796 + GFF5785 0.56 -0.4 160,985 + GFF5785 0.69 +1.2 160,985 + GFF5785 0.69 +0.5 161,108 + GFF5785 0.78 -2.4 161,109 - GFF5785 0.78 +0.9 161,109 - GFF5785 0.78 +1.0 161,109 - GFF5785 0.78 -0.3 161,109 - GFF5785 0.78 +2.3 161,109 - GFF5785 0.78 +0.2 161,179 + GFF5785 0.83 +2.1 161,180 - GFF5785 0.83 -0.7 161,231 + GFF5785 0.86 -0.5 161,231 + GFF5785 0.86 -2.1 161,231 + GFF5785 0.86 -1.0 161,232 - GFF5785 0.86 -0.1 161,232 - GFF5785 0.86 -1.0 161,232 - GFF5785 0.86 -2.5 161,232 - GFF5785 0.86 -1.6 161,232 - GFF5785 0.86 +0.4 161,232 - GFF5785 0.86 +0.9 161,599 + -0.5 161,599 + -1.0 161,599 + +1.2 161,599 + +0.6 161,599 + -0.8 161,599 + -1.0 161,599 + +0.2 161,599 + -0.4 161,600 - -1.1 161,600 - +0.6 161,600 - -0.5 161,869 + GFF5786 0.50 -0.5 161,869 + GFF5786 0.50 -0.4 161,869 + GFF5786 0.50 +1.2 161,869 + GFF5786 0.50 -0.7 161,869 + GFF5786 0.50 +1.5 161,870 - GFF5786 0.50 +0.2 161,870 - GFF5786 0.50 -1.0 161,870 - GFF5786 0.50 -0.9 161,870 - GFF5786 0.50 +0.2 161,870 - GFF5786 0.50 -1.0 161,870 - GFF5786 0.50 -1.0 161,870 - GFF5786 0.50 -1.3 161,870 - GFF5786 0.50 +0.7 161,870 - GFF5786 0.50 -0.4 161,870 - GFF5786 0.50 +1.5 161,930 - GFF5786 0.60 -0.3 161,930 - GFF5786 0.60 +0.5 162,160 + -2.7 162,160 + -0.1 162,160 + -3.0 162,160 + -2.8 162,161 - +0.2 162,161 - +0.9 162,161 - -1.5 162,161 - -2.7 162,161 - -0.3 162,161 - +1.2 162,161 - -0.7
Or see this region's nucleotide sequence