Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5779 and GFF5780 are separated by 6 nucleotides GFF5780 and GFF5781 are separated by 219 nucleotides
GFF5779 - L-idonate 5-dehydrogenase (EC 1.1.1.264), at 153,694 to 154,758
GFF5779
GFF5780 - Positive regulator of L-idonate catabolism, at 154,765 to 155,775
GFF5780
GFF5781 - Transcriptional regulator, LysR family, at 155,995 to 156,894
GFF5781
Position (kb) 154
155
156 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 153.785 kb on + strand at 153.785 kb on + strand at 153.785 kb on + strand at 153.786 kb on - strand at 153.786 kb on - strand at 153.786 kb on - strand at 153.786 kb on - strand at 153.832 kb on + strand, within GFF5779 at 153.832 kb on + strand, within GFF5779 at 153.833 kb on - strand, within GFF5779 at 153.833 kb on - strand, within GFF5779 at 154.039 kb on + strand, within GFF5779 at 154.039 kb on + strand, within GFF5779 at 154.039 kb on + strand, within GFF5779 at 154.040 kb on - strand, within GFF5779 at 154.040 kb on - strand, within GFF5779 at 154.393 kb on + strand, within GFF5779 at 154.653 kb on + strand at 154.654 kb on - strand at 155.108 kb on + strand, within GFF5780 at 155.486 kb on + strand, within GFF5780 at 155.639 kb on + strand, within GFF5780 at 155.639 kb on + strand, within GFF5780 at 155.639 kb on + strand, within GFF5780 at 155.640 kb on - strand, within GFF5780 at 155.640 kb on - strand, within GFF5780 at 155.640 kb on - strand, within GFF5780 at 155.640 kb on - strand, within GFF5780 at 155.640 kb on - strand, within GFF5780 at 155.640 kb on - strand, within GFF5780 at 155.640 kb on - strand, within GFF5780 at 155.640 kb on - strand, within GFF5780 at 155.974 kb on + strand at 155.974 kb on + strand at 155.975 kb on - strand at 155.975 kb on - strand at 155.975 kb on - strand at 155.975 kb on - strand at 155.975 kb on - strand at 156.527 kb on + strand, within GFF5781 at 156.527 kb on + strand, within GFF5781 at 156.528 kb on - strand, within GFF5781 at 156.528 kb on - strand, within GFF5781 at 156.528 kb on - strand, within GFF5781 at 156.680 kb on + strand, within GFF5781 at 156.680 kb on + strand, within GFF5781 at 156.681 kb on - strand, within GFF5781 at 156.681 kb on - strand, within GFF5781
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 153,785 + -2.5 153,785 + +0.5 153,785 + +1.0 153,786 - +1.2 153,786 - +1.6 153,786 - -1.0 153,786 - -1.3 153,832 + GFF5779 0.13 +0.2 153,832 + GFF5779 0.13 -1.0 153,833 - GFF5779 0.13 +0.6 153,833 - GFF5779 0.13 +2.4 154,039 + GFF5779 0.32 -0.5 154,039 + GFF5779 0.32 +1.7 154,039 + GFF5779 0.32 +2.5 154,040 - GFF5779 0.32 +0.4 154,040 - GFF5779 0.32 -0.1 154,393 + GFF5779 0.66 -2.5 154,653 + -2.9 154,654 - +1.2 155,108 + GFF5780 0.34 +1.3 155,486 + GFF5780 0.71 +3.8 155,639 + GFF5780 0.86 +1.3 155,639 + GFF5780 0.86 -1.1 155,639 + GFF5780 0.86 +0.2 155,640 - GFF5780 0.87 -0.8 155,640 - GFF5780 0.87 -0.8 155,640 - GFF5780 0.87 -0.3 155,640 - GFF5780 0.87 -0.2 155,640 - GFF5780 0.87 -1.0 155,640 - GFF5780 0.87 +0.6 155,640 - GFF5780 0.87 -1.8 155,640 - GFF5780 0.87 +0.4 155,974 + +1.0 155,974 + -1.5 155,975 - +0.3 155,975 - +2.4 155,975 - -0.3 155,975 - -1.5 155,975 - -4.0 156,527 + GFF5781 0.59 -0.5 156,527 + GFF5781 0.59 +0.5 156,528 - GFF5781 0.59 -0.1 156,528 - GFF5781 0.59 -0.8 156,528 - GFF5781 0.59 -0.5 156,680 + GFF5781 0.76 +1.0 156,680 + GFF5781 0.76 +1.5 156,681 - GFF5781 0.76 +0.8 156,681 - GFF5781 0.76 -1.0
Or see this region's nucleotide sequence