Strain Fitness in Variovorax sp. SCN45 around GFF5779

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
152,770	-				+2.2
152,770	-				-0.8
152,805	+				+0.7
152,805	+				+1.7
152,806	-				+1.7
152,806	-				-1.3
152,806	-				-1.3
152,806	-				+1.5
152,955	+		GFF5778	0.24	-0.1
152,956	-		GFF5778	0.24	+1.3
152,956	-		GFF5778	0.24	+0.9
153,785	+				-2.5
153,785	+				+0.5
153,785	+				+1.0
153,786	-				+1.2
153,786	-				+1.6
153,786	-				-1.0
153,786	-				-1.3
153,832	+		GFF5779	0.13	+0.2
153,832	+		GFF5779	0.13	-1.0
153,833	-		GFF5779	0.13	+0.6
153,833	-		GFF5779	0.13	+2.4
154,039	+		GFF5779	0.32	-0.5
154,039	+		GFF5779	0.32	+1.7
154,039	+		GFF5779	0.32	+2.5
154,040	-		GFF5779	0.32	+0.4
154,040	-		GFF5779	0.32	-0.1
154,393	+		GFF5779	0.66	-2.5
154,653	+				-2.9
154,654	-				+1.2
155,108	+		GFF5780	0.34	+1.3
155,486	+		GFF5780	0.71	+3.8
155,639	+		GFF5780	0.86	+1.3
155,639	+		GFF5780	0.86	-1.1
155,639	+		GFF5780	0.86	+0.2
155,640	-		GFF5780	0.87	-0.8
155,640	-		GFF5780	0.87	-0.8
155,640	-		GFF5780	0.87	-0.3
155,640	-		GFF5780	0.87	-0.2
155,640	-		GFF5780	0.87	-1.0
155,640	-		GFF5780	0.87	+0.6
155,640	-		GFF5780	0.87	-1.8
155,640	-		GFF5780	0.87	+0.4