Strain Fitness in Variovorax sp. SCN45 around GFF5766

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
138,070	+				-0.8
138,070	+				-0.8
138,070	+				-1.0
138,070	+				-0.8
138,070	+				+0.2
138,074	+				-1.7
138,074	+				-0.7
138,074	+				-0.8
138,074	+				-0.7
138,074	+				-1.9
138,075	-				+0.2
138,075	-				+0.9
138,214	+		GFF5765	0.13	-0.8
138,215	-		GFF5765	0.13	+0.1
138,215	-		GFF5765	0.13	-1.1
138,215	-		GFF5765	0.13	+0.7
138,215	-		GFF5765	0.13	+1.6
138,215	-		GFF5765	0.13	-0.4
138,215	-		GFF5765	0.13	-0.4
138,268	+		GFF5765	0.19	+1.0
138,268	+		GFF5765	0.19	-1.0
138,268	+		GFF5765	0.19	-0.0
138,269	-		GFF5765	0.19	+1.6
138,269	-		GFF5765	0.19	+2.1
138,454	+		GFF5765	0.41	-0.8
138,766	+		GFF5765	0.79	-0.1
138,767	-		GFF5765	0.79	+0.5
138,904	+				+0.2
138,904	+				+1.5
138,987	+				-0.8
138,987	+				+0.2
139,038	+		GFF5766	0.15	-1.4
139,038	+		GFF5766	0.15	+0.4
139,038	+		GFF5766	0.15	-0.1
139,038	+		GFF5766	0.15	+0.4
139,041	+		GFF5766	0.15	-3.7
139,041	+		GFF5766	0.15	+2.2
139,041	+		GFF5766	0.15	-4.1
139,042	-		GFF5766	0.15	+0.9
139,042	-		GFF5766	0.15	-1.1
139,206	+		GFF5766	0.40	-0.1
139,353	+		GFF5766	0.61	-3.2
139,354	-		GFF5766	0.61	-1.3
139,419	+		GFF5766	0.71	-0.1
139,419	+		GFF5766	0.71	+0.2
139,419	+		GFF5766	0.71	-2.0
139,419	+		GFF5766	0.71	-1.0
139,419	+		GFF5766	0.71	-0.9
139,419	+		GFF5766	0.71	-0.8
139,420	-		GFF5766	0.71	+0.6
139,420	-		GFF5766	0.71	-0.6
139,632	+				-1.2
139,632	+				-1.3
139,632	+				-1.0
139,632	+				+0.7
139,970	+		GFF5767	0.33	+4.6
139,970	+		GFF5767	0.33	+0.2
139,971	-		GFF5767	0.33	-0.6
140,309	+		GFF5767	0.64	+0.1
140,315	+		GFF5767	0.65	+1.7
140,316	-		GFF5767	0.65	-0.6
140,316	-		GFF5767	0.65	-0.1
140,316	-		GFF5767	0.65	-0.6
140,316	-		GFF5767	0.65	+1.2
140,366	+		GFF5767	0.70	-2.0
140,366	+		GFF5767	0.70	-3.2
140,367	-		GFF5767	0.70	-0.3
140,448	-		GFF5767	0.77	-0.4