Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5745 and GFF5746 are separated by 16 nucleotides GFF5746 and GFF5747 overlap by 4 nucleotides GFF5747 and GFF5748 are separated by 5 nucleotides GFF5748 and GFF5749 overlap by 14 nucleotides
GFF5745 - Flagellar hook-length control protein FliK, at 117,444 to 118,883
GFF5745
GFF5746 - Flagellar protein FliJ, at 118,900 to 119,355
GFF5746
GFF5747 - Flagellum-specific ATP synthase FliI, at 119,352 to 120,821
GFF5747
GFF5748 - Flagellar assembly protein FliH, at 120,827 to 121,645
GFF5748
GFF5749 - Flagellar motor switch protein FliG, at 121,632 to 122,630
GFF5749
Position (kb) 119
120
121 Strain fitness (log2 ratio) -2
-1
0
1 at 119.210 kb on + strand, within GFF5746 at 119.211 kb on - strand, within GFF5746 at 119.222 kb on + strand, within GFF5746 at 119.506 kb on + strand, within GFF5747 at 119.506 kb on + strand, within GFF5747 at 119.692 kb on + strand, within GFF5747 at 119.803 kb on + strand, within GFF5747 at 119.803 kb on + strand, within GFF5747 at 119.804 kb on - strand, within GFF5747 at 120.017 kb on - strand, within GFF5747 at 120.038 kb on - strand, within GFF5747 at 120.613 kb on + strand, within GFF5747 at 120.613 kb on + strand, within GFF5747
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 119,210 + GFF5746 0.68 -1.6 119,211 - GFF5746 0.68 +0.1 119,222 + GFF5746 0.71 +1.1 119,506 + GFF5747 0.10 +1.2 119,506 + GFF5747 0.10 -1.0 119,692 + GFF5747 0.23 +1.0 119,803 + GFF5747 0.31 -0.3 119,803 + GFF5747 0.31 +0.6 119,804 - GFF5747 0.31 -2.5 120,017 - GFF5747 0.45 -2.5 120,038 - GFF5747 0.47 +0.1 120,613 + GFF5747 0.86 -0.2 120,613 + GFF5747 0.86 -1.7
Or see this region's nucleotide sequence