Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5704 and GFF5705 are separated by 231 nucleotides GFF5705 and GFF5706 are separated by 3 nucleotides GFF5706 and GFF5707 are separated by 146 nucleotides
GFF5704 - Seryl-tRNA synthetase (EC 6.1.1.11), at 77,893 to 79,224
GFF5704
GFF5705 - Transcriptional regulator, AcrR family, at 79,456 to 80,031
GFF5705
GFF5706 - no description, at 80,035 to 80,187
GFF5706
GFF5707 - Transcriptional regulator, LysR family, at 80,334 to 81,191
GFF5707
Position (kb) 80
81 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 79.242 kb on + strand at 79.444 kb on + strand at 79.444 kb on + strand at 79.444 kb on + strand at 79.444 kb on + strand at 79.444 kb on + strand at 79.445 kb on - strand at 79.445 kb on - strand at 79.445 kb on - strand at 79.445 kb on - strand at 79.482 kb on - strand at 79.482 kb on - strand at 79.539 kb on + strand, within GFF5705 at 79.539 kb on + strand, within GFF5705 at 79.539 kb on + strand, within GFF5705 at 79.539 kb on + strand, within GFF5705 at 79.539 kb on + strand, within GFF5705 at 79.539 kb on + strand, within GFF5705 at 79.539 kb on + strand, within GFF5705 at 79.540 kb on - strand, within GFF5705 at 79.540 kb on - strand, within GFF5705 at 79.540 kb on - strand, within GFF5705 at 79.540 kb on - strand, within GFF5705 at 79.540 kb on - strand, within GFF5705 at 79.540 kb on - strand, within GFF5705 at 79.573 kb on + strand, within GFF5705 at 79.573 kb on + strand, within GFF5705 at 79.573 kb on + strand, within GFF5705 at 79.574 kb on - strand, within GFF5705 at 79.574 kb on - strand, within GFF5705 at 79.601 kb on - strand, within GFF5705 at 79.621 kb on + strand, within GFF5705 at 79.621 kb on + strand, within GFF5705 at 79.621 kb on + strand, within GFF5705 at 79.621 kb on + strand, within GFF5705 at 79.621 kb on + strand, within GFF5705 at 79.622 kb on - strand, within GFF5705 at 79.622 kb on - strand, within GFF5705 at 79.622 kb on - strand, within GFF5705 at 79.622 kb on - strand, within GFF5705 at 79.622 kb on - strand, within GFF5705 at 79.622 kb on - strand, within GFF5705 at 79.834 kb on + strand, within GFF5705 at 79.835 kb on - strand, within GFF5705 at 79.835 kb on - strand, within GFF5705 at 79.835 kb on - strand, within GFF5705 at 80.144 kb on + strand, within GFF5706 at 80.144 kb on + strand, within GFF5706 at 80.144 kb on + strand, within GFF5706 at 80.144 kb on - strand, within GFF5706 at 80.145 kb on - strand, within GFF5706 at 80.145 kb on - strand, within GFF5706 at 80.153 kb on + strand, within GFF5706 at 80.269 kb on - strand at 80.328 kb on + strand at 80.328 kb on + strand at 80.328 kb on + strand at 80.329 kb on - strand at 80.329 kb on - strand at 80.329 kb on - strand at 80.560 kb on + strand, within GFF5707 at 80.826 kb on + strand, within GFF5707 at 80.864 kb on - strand, within GFF5707 at 81.034 kb on + strand, within GFF5707
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 79,242 + -2.0 79,444 + -1.5 79,444 + -3.3 79,444 + +1.1 79,444 + -1.1 79,444 + +2.2 79,445 - -1.1 79,445 - -0.6 79,445 - +2.5 79,445 - -2.0 79,482 - -2.3 79,482 - +0.5 79,539 + GFF5705 0.14 +1.0 79,539 + GFF5705 0.14 -0.1 79,539 + GFF5705 0.14 -0.3 79,539 + GFF5705 0.14 +1.2 79,539 + GFF5705 0.14 +1.2 79,539 + GFF5705 0.14 -1.6 79,539 + GFF5705 0.14 -0.3 79,540 - GFF5705 0.15 +1.2 79,540 - GFF5705 0.15 -1.4 79,540 - GFF5705 0.15 -2.9 79,540 - GFF5705 0.15 +0.9 79,540 - GFF5705 0.15 +0.2 79,540 - GFF5705 0.15 +0.1 79,573 + GFF5705 0.20 +0.3 79,573 + GFF5705 0.20 -2.7 79,573 + GFF5705 0.20 -0.2 79,574 - GFF5705 0.20 +0.2 79,574 - GFF5705 0.20 +0.3 79,601 - GFF5705 0.25 -0.5 79,621 + GFF5705 0.29 -0.5 79,621 + GFF5705 0.29 -1.3 79,621 + GFF5705 0.29 -1.4 79,621 + GFF5705 0.29 +1.1 79,621 + GFF5705 0.29 +0.1 79,622 - GFF5705 0.29 -0.9 79,622 - GFF5705 0.29 -0.4 79,622 - GFF5705 0.29 -1.0 79,622 - GFF5705 0.29 +0.5 79,622 - GFF5705 0.29 +0.6 79,622 - GFF5705 0.29 -2.5 79,834 + GFF5705 0.66 -0.2 79,835 - GFF5705 0.66 -0.9 79,835 - GFF5705 0.66 +0.2 79,835 - GFF5705 0.66 +0.3 80,144 + GFF5706 0.71 +0.0 80,144 + GFF5706 0.71 +2.7 80,144 + GFF5706 0.71 -2.2 80,144 - GFF5706 0.71 +0.1 80,145 - GFF5706 0.72 +0.1 80,145 - GFF5706 0.72 +3.4 80,153 + GFF5706 0.77 -2.3 80,269 - +0.0 80,328 + -0.1 80,328 + -0.7 80,328 + +1.4 80,329 - +0.1 80,329 - +0.7 80,329 - +1.9 80,560 + GFF5707 0.26 -0.2 80,826 + GFF5707 0.57 -1.8 80,864 - GFF5707 0.62 -1.8 81,034 + GFF5707 0.82 -0.6
Or see this region's nucleotide sequence