Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5695 and GFF5696 are separated by 27 nucleotides GFF5696 and GFF5697 are separated by 50 nucleotides
GFF5695 - Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9), FabV => refractory to triclosan, at 68,882 to 70,078
GFF5695
GFF5696 - Hemoglobin-like protein HbO, at 70,106 to 70,525
GFF5696
GFF5697 - Ferredoxin reductase, at 70,576 to 71,805
GFF5697
Position (kb) 70
71 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 69.146 kb on + strand, within GFF5695 at 69.146 kb on + strand, within GFF5695 at 69.147 kb on - strand, within GFF5695 at 69.147 kb on - strand, within GFF5695 at 69.147 kb on - strand, within GFF5695 at 69.147 kb on - strand, within GFF5695 at 69.147 kb on - strand, within GFF5695 at 69.191 kb on + strand, within GFF5695 at 69.192 kb on - strand, within GFF5695 at 69.290 kb on + strand, within GFF5695 at 69.290 kb on + strand, within GFF5695 at 69.290 kb on + strand, within GFF5695 at 69.291 kb on - strand, within GFF5695 at 69.291 kb on - strand, within GFF5695 at 69.403 kb on + strand, within GFF5695 at 69.554 kb on + strand, within GFF5695 at 69.554 kb on + strand, within GFF5695 at 69.554 kb on + strand, within GFF5695 at 69.554 kb on + strand, within GFF5695 at 69.554 kb on + strand, within GFF5695 at 69.554 kb on + strand, within GFF5695 at 69.555 kb on - strand, within GFF5695 at 69.555 kb on - strand, within GFF5695 at 69.584 kb on + strand, within GFF5695 at 69.584 kb on + strand, within GFF5695 at 69.584 kb on + strand, within GFF5695 at 69.585 kb on - strand, within GFF5695 at 69.585 kb on - strand, within GFF5695 at 69.740 kb on + strand, within GFF5695 at 69.740 kb on + strand, within GFF5695 at 69.740 kb on + strand, within GFF5695 at 69.740 kb on + strand, within GFF5695 at 69.741 kb on - strand, within GFF5695 at 69.741 kb on - strand, within GFF5695 at 69.815 kb on + strand, within GFF5695 at 69.816 kb on - strand, within GFF5695 at 69.816 kb on - strand, within GFF5695 at 69.816 kb on - strand, within GFF5695 at 69.831 kb on - strand, within GFF5695 at 69.878 kb on + strand, within GFF5695 at 69.878 kb on + strand, within GFF5695 at 69.879 kb on - strand, within GFF5695 at 69.879 kb on - strand, within GFF5695 at 69.879 kb on - strand, within GFF5695 at 70.026 kb on - strand at 70.026 kb on - strand at 70.095 kb on + strand at 70.095 kb on + strand at 70.095 kb on + strand at 70.096 kb on - strand at 70.193 kb on + strand, within GFF5696 at 70.193 kb on + strand, within GFF5696 at 70.194 kb on - strand, within GFF5696 at 70.194 kb on - strand, within GFF5696 at 70.194 kb on - strand, within GFF5696 at 70.194 kb on - strand, within GFF5696 at 70.221 kb on - strand, within GFF5696 at 70.316 kb on + strand, within GFF5696 at 70.316 kb on + strand, within GFF5696 at 70.317 kb on - strand, within GFF5696 at 70.317 kb on - strand, within GFF5696 at 70.317 kb on - strand, within GFF5696 at 70.317 kb on - strand, within GFF5696 at 70.547 kb on + strand at 70.548 kb on - strand at 70.551 kb on + strand at 70.551 kb on + strand at 70.551 kb on + strand at 70.551 kb on + strand at 70.551 kb on + strand at 70.552 kb on - strand at 70.552 kb on - strand at 70.583 kb on - strand at 70.693 kb on + strand at 70.694 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 69,146 + GFF5695 0.22 +0.6 69,146 + GFF5695 0.22 -1.2 69,147 - GFF5695 0.22 -1.0 69,147 - GFF5695 0.22 +0.8 69,147 - GFF5695 0.22 -2.0 69,147 - GFF5695 0.22 +1.8 69,147 - GFF5695 0.22 -1.0 69,191 + GFF5695 0.26 +1.0 69,192 - GFF5695 0.26 -0.1 69,290 + GFF5695 0.34 -1.6 69,290 + GFF5695 0.34 -0.8 69,290 + GFF5695 0.34 +1.8 69,291 - GFF5695 0.34 -1.5 69,291 - GFF5695 0.34 -1.5 69,403 + GFF5695 0.44 +0.5 69,554 + GFF5695 0.56 -1.2 69,554 + GFF5695 0.56 +2.2 69,554 + GFF5695 0.56 +0.4 69,554 + GFF5695 0.56 +2.2 69,554 + GFF5695 0.56 -1.3 69,554 + GFF5695 0.56 +0.7 69,555 - GFF5695 0.56 -3.3 69,555 - GFF5695 0.56 +1.3 69,584 + GFF5695 0.59 +0.1 69,584 + GFF5695 0.59 +1.1 69,584 + GFF5695 0.59 +0.1 69,585 - GFF5695 0.59 -1.9 69,585 - GFF5695 0.59 +0.1 69,740 + GFF5695 0.72 +0.6 69,740 + GFF5695 0.72 -2.0 69,740 + GFF5695 0.72 -1.4 69,740 + GFF5695 0.72 +1.0 69,741 - GFF5695 0.72 -0.8 69,741 - GFF5695 0.72 -1.7 69,815 + GFF5695 0.78 -2.0 69,816 - GFF5695 0.78 +0.4 69,816 - GFF5695 0.78 -2.5 69,816 - GFF5695 0.78 +1.8 69,831 - GFF5695 0.79 -1.5 69,878 + GFF5695 0.83 +0.8 69,878 + GFF5695 0.83 +1.7 69,879 - GFF5695 0.83 -2.3 69,879 - GFF5695 0.83 -1.6 69,879 - GFF5695 0.83 -2.0 70,026 - -0.1 70,026 - +0.6 70,095 + -2.3 70,095 + +0.5 70,095 + -0.5 70,096 - -3.0 70,193 + GFF5696 0.21 -2.4 70,193 + GFF5696 0.21 -0.9 70,194 - GFF5696 0.21 -0.5 70,194 - GFF5696 0.21 -1.8 70,194 - GFF5696 0.21 -0.2 70,194 - GFF5696 0.21 +0.2 70,221 - GFF5696 0.27 +1.1 70,316 + GFF5696 0.50 +0.4 70,316 + GFF5696 0.50 -2.4 70,317 - GFF5696 0.50 -1.4 70,317 - GFF5696 0.50 -0.7 70,317 - GFF5696 0.50 -3.1 70,317 - GFF5696 0.50 -0.6 70,547 + +1.1 70,548 - +0.8 70,551 + +0.2 70,551 + -0.7 70,551 + -1.8 70,551 + -1.8 70,551 + -2.1 70,552 - -0.3 70,552 - +3.0 70,583 - -1.3 70,693 + -1.3 70,694 - -1.3
Or see this region's nucleotide sequence