Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF568 and GFF569 are separated by 42 nucleotides GFF569 and GFF570 overlap by 4 nucleotides
GFF568 - Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193), at 614,570 to 615,667
GFF568
GFF569 - Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9), at 615,710 to 616,375
GFF569
GFF570 - 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25), at 616,372 to 617,526
GFF570
Position (kb) 615
616
617 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 615.665 kb on + strand at 615.665 kb on + strand at 615.665 kb on + strand at 615.666 kb on - strand at 615.666 kb on - strand at 615.666 kb on - strand at 615.666 kb on - strand at 615.672 kb on + strand at 615.815 kb on + strand, within GFF569 at 615.816 kb on - strand, within GFF569 at 616.021 kb on - strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.127 kb on + strand, within GFF569 at 616.128 kb on - strand, within GFF569 at 616.128 kb on - strand, within GFF569 at 616.128 kb on - strand, within GFF569 at 616.278 kb on + strand, within GFF569 at 616.278 kb on + strand, within GFF569 at 616.278 kb on + strand, within GFF569 at 616.279 kb on - strand, within GFF569 at 616.279 kb on - strand, within GFF569 at 616.301 kb on + strand, within GFF569 at 616.301 kb on + strand, within GFF569 at 616.301 kb on + strand, within GFF569 at 616.301 kb on + strand, within GFF569 at 616.301 kb on + strand, within GFF569 at 616.301 kb on + strand, within GFF569 at 616.302 kb on - strand, within GFF569 at 616.302 kb on - strand, within GFF569 at 616.302 kb on - strand, within GFF569 at 616.302 kb on - strand, within GFF569 at 616.302 kb on - strand, within GFF569 at 616.302 kb on - strand, within GFF569 at 616.302 kb on - strand, within GFF569 at 616.302 kb on - strand, within GFF569 at 616.302 kb on - strand, within GFF569 at 616.352 kb on + strand at 616.352 kb on + strand at 616.352 kb on + strand at 616.352 kb on + strand at 616.352 kb on + strand at 616.352 kb on + strand at 616.353 kb on - strand at 616.353 kb on - strand at 616.353 kb on - strand at 616.353 kb on - strand at 616.353 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 615,665 + +0.1 615,665 + -0.5 615,665 + -2.3 615,666 - -1.7 615,666 - -1.0 615,666 - -1.2 615,666 - -0.2 615,672 + +0.6 615,815 + GFF569 0.16 -2.3 615,816 - GFF569 0.16 -1.7 616,021 - GFF569 0.47 +0.8 616,127 + GFF569 0.63 -1.5 616,127 + GFF569 0.63 -1.0 616,127 + GFF569 0.63 -0.9 616,127 + GFF569 0.63 +0.2 616,127 + GFF569 0.63 -1.2 616,127 + GFF569 0.63 +0.9 616,127 + GFF569 0.63 +2.8 616,127 + GFF569 0.63 -0.1 616,127 + GFF569 0.63 +0.2 616,127 + GFF569 0.63 -0.5 616,127 + GFF569 0.63 -2.9 616,127 + GFF569 0.63 -1.2 616,127 + GFF569 0.63 -2.3 616,127 + GFF569 0.63 -0.7 616,127 + GFF569 0.63 -2.1 616,128 - GFF569 0.63 +1.8 616,128 - GFF569 0.63 +1.8 616,128 - GFF569 0.63 -0.5 616,278 + GFF569 0.85 -0.8 616,278 + GFF569 0.85 -2.1 616,278 + GFF569 0.85 +1.3 616,279 - GFF569 0.85 -0.5 616,279 - GFF569 0.85 -0.8 616,301 + GFF569 0.89 +0.7 616,301 + GFF569 0.89 +2.5 616,301 + GFF569 0.89 -1.7 616,301 + GFF569 0.89 -1.4 616,301 + GFF569 0.89 -2.7 616,301 + GFF569 0.89 -2.0 616,302 - GFF569 0.89 -1.7 616,302 - GFF569 0.89 -0.5 616,302 - GFF569 0.89 +1.8 616,302 - GFF569 0.89 -0.4 616,302 - GFF569 0.89 -1.7 616,302 - GFF569 0.89 -2.1 616,302 - GFF569 0.89 +0.8 616,302 - GFF569 0.89 -1.9 616,302 - GFF569 0.89 +0.2 616,352 + -1.2 616,352 + -1.3 616,352 + -0.0 616,352 + -2.8 616,352 + -1.8 616,352 + -0.3 616,353 - -1.2 616,353 - -0.8 616,353 - -0.2 616,353 - +0.8 616,353 - +0.2
Or see this region's nucleotide sequence