Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5681 and GFF5682 overlap by 4 nucleotides GFF5682 and GFF5683 are separated by 61 nucleotides
GFF5681 - Predicted gluconate TRAP family transporter, DctM subunit, at 55,748 to 57,688
GFF5681
GFF5682 - TRAP-type transport system, periplasmic component, at 57,685 to 58,698
GFF5682
GFF5683 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 58,760 to 60,349
GFF5683
Position (kb) 57
58
59 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 56.709 kb on + strand, within GFF5681 at 56.709 kb on + strand, within GFF5681 at 56.709 kb on + strand, within GFF5681 at 56.709 kb on + strand, within GFF5681 at 56.710 kb on - strand, within GFF5681 at 56.710 kb on - strand, within GFF5681 at 56.710 kb on - strand, within GFF5681 at 56.710 kb on - strand, within GFF5681 at 56.730 kb on + strand, within GFF5681 at 56.730 kb on + strand, within GFF5681 at 56.730 kb on + strand, within GFF5681 at 56.730 kb on + strand, within GFF5681 at 56.730 kb on + strand, within GFF5681 at 56.730 kb on + strand, within GFF5681 at 56.730 kb on + strand, within GFF5681 at 56.730 kb on + strand, within GFF5681 at 56.730 kb on + strand, within GFF5681 at 56.730 kb on + strand, within GFF5681 at 56.730 kb on + strand, within GFF5681 at 56.923 kb on - strand, within GFF5681 at 56.923 kb on - strand, within GFF5681 at 57.015 kb on - strand, within GFF5681 at 57.237 kb on + strand, within GFF5681 at 57.238 kb on - strand, within GFF5681 at 57.238 kb on - strand, within GFF5681 at 57.238 kb on - strand, within GFF5681 at 57.238 kb on - strand, within GFF5681 at 57.238 kb on - strand, within GFF5681 at 57.238 kb on - strand, within GFF5681 at 57.238 kb on - strand, within GFF5681 at 57.285 kb on + strand, within GFF5681 at 57.285 kb on + strand, within GFF5681 at 57.285 kb on + strand, within GFF5681 at 57.286 kb on - strand, within GFF5681 at 57.286 kb on - strand, within GFF5681 at 57.286 kb on - strand, within GFF5681 at 57.286 kb on - strand, within GFF5681 at 57.286 kb on - strand, within GFF5681 at 57.286 kb on - strand, within GFF5681 at 57.286 kb on - strand, within GFF5681 at 57.737 kb on + strand at 57.738 kb on - strand at 57.758 kb on + strand at 57.758 kb on + strand at 57.758 kb on + strand at 57.758 kb on + strand at 57.759 kb on - strand at 57.759 kb on - strand at 58.004 kb on + strand, within GFF5682 at 58.004 kb on + strand, within GFF5682 at 58.004 kb on + strand, within GFF5682 at 58.004 kb on + strand, within GFF5682 at 58.005 kb on - strand, within GFF5682 at 58.005 kb on - strand, within GFF5682 at 58.005 kb on - strand, within GFF5682 at 58.019 kb on + strand, within GFF5682 at 58.019 kb on + strand, within GFF5682 at 58.019 kb on + strand, within GFF5682 at 58.019 kb on + strand, within GFF5682 at 58.020 kb on - strand, within GFF5682 at 58.091 kb on + strand, within GFF5682 at 58.091 kb on + strand, within GFF5682 at 58.091 kb on + strand, within GFF5682 at 58.092 kb on - strand, within GFF5682 at 58.092 kb on - strand, within GFF5682 at 58.092 kb on - strand, within GFF5682 at 58.344 kb on - strand, within GFF5682 at 58.344 kb on - strand, within GFF5682 at 58.344 kb on - strand, within GFF5682 at 58.592 kb on + strand, within GFF5682 at 58.592 kb on + strand, within GFF5682 at 58.592 kb on + strand, within GFF5682 at 58.592 kb on + strand, within GFF5682 at 58.592 kb on + strand, within GFF5682 at 58.593 kb on - strand, within GFF5682 at 58.593 kb on - strand, within GFF5682 at 58.593 kb on - strand, within GFF5682 at 58.593 kb on - strand, within GFF5682 at 58.593 kb on - strand, within GFF5682 at 58.593 kb on - strand, within GFF5682 at 58.593 kb on - strand, within GFF5682 at 58.593 kb on - strand, within GFF5682 at 58.593 kb on - strand, within GFF5682 at 58.593 kb on - strand, within GFF5682 at 58.598 kb on + strand at 58.598 kb on + strand at 58.598 kb on + strand at 58.598 kb on + strand at 58.598 kb on + strand at 58.599 kb on - strand at 58.599 kb on - strand at 58.709 kb on + strand at 58.709 kb on + strand at 58.709 kb on + strand at 58.709 kb on + strand at 58.716 kb on + strand at 58.716 kb on + strand at 58.716 kb on + strand at 58.716 kb on + strand at 58.716 kb on + strand at 58.716 kb on + strand at 58.716 kb on + strand at 58.717 kb on - strand at 58.717 kb on - strand at 58.717 kb on - strand at 58.717 kb on - strand at 58.717 kb on - strand at 58.812 kb on - strand at 58.812 kb on - strand at 58.812 kb on - strand at 58.812 kb on - strand at 58.815 kb on + strand at 58.815 kb on + strand at 58.837 kb on - strand at 59.085 kb on + strand, within GFF5683 at 59.085 kb on + strand, within GFF5683 at 59.085 kb on + strand, within GFF5683 at 59.085 kb on + strand, within GFF5683 at 59.085 kb on + strand, within GFF5683 at 59.085 kb on + strand, within GFF5683 at 59.085 kb on + strand, within GFF5683 at 59.085 kb on + strand, within GFF5683 at 59.085 kb on + strand, within GFF5683 at 59.085 kb on + strand, within GFF5683 at 59.085 kb on + strand, within GFF5683 at 59.085 kb on + strand, within GFF5683 at 59.085 kb on + strand, within GFF5683 at 59.085 kb on + strand, within GFF5683 at 59.086 kb on - strand, within GFF5683 at 59.086 kb on - strand, within GFF5683 at 59.086 kb on - strand, within GFF5683 at 59.086 kb on - strand, within GFF5683 at 59.086 kb on - strand, within GFF5683 at 59.086 kb on - strand, within GFF5683 at 59.086 kb on - strand, within GFF5683 at 59.086 kb on - strand, within GFF5683 at 59.086 kb on - strand, within GFF5683 at 59.086 kb on - strand, within GFF5683 at 59.086 kb on - strand, within GFF5683 at 59.086 kb on - strand, within GFF5683 at 59.086 kb on - strand, within GFF5683 at 59.086 kb on - strand, within GFF5683 at 59.086 kb on - strand, within GFF5683 at 59.086 kb on - strand, within GFF5683 at 59.086 kb on - strand, within GFF5683 at 59.086 kb on - strand, within GFF5683 at 59.086 kb on - strand, within GFF5683 at 59.086 kb on - strand, within GFF5683 at 59.086 kb on - strand, within GFF5683 at 59.112 kb on + strand, within GFF5683 at 59.112 kb on + strand, within GFF5683 at 59.112 kb on + strand, within GFF5683 at 59.112 kb on + strand, within GFF5683 at 59.112 kb on + strand, within GFF5683 at 59.112 kb on + strand, within GFF5683 at 59.112 kb on + strand, within GFF5683 at 59.112 kb on + strand, within GFF5683 at 59.112 kb on + strand, within GFF5683 at 59.112 kb on + strand, within GFF5683 at 59.112 kb on + strand, within GFF5683 at 59.113 kb on - strand, within GFF5683 at 59.113 kb on - strand, within GFF5683 at 59.113 kb on - strand, within GFF5683 at 59.206 kb on - strand, within GFF5683 at 59.415 kb on + strand, within GFF5683 at 59.415 kb on + strand, within GFF5683 at 59.415 kb on + strand, within GFF5683 at 59.416 kb on - strand, within GFF5683 at 59.416 kb on - strand, within GFF5683 at 59.470 kb on - strand, within GFF5683 at 59.470 kb on - strand, within GFF5683 at 59.487 kb on + strand, within GFF5683 at 59.487 kb on + strand, within GFF5683 at 59.487 kb on + strand, within GFF5683 at 59.487 kb on + strand, within GFF5683 at 59.487 kb on + strand, within GFF5683 at 59.488 kb on - strand, within GFF5683 at 59.488 kb on - strand, within GFF5683 at 59.496 kb on + strand, within GFF5683 at 59.496 kb on + strand, within GFF5683 at 59.496 kb on + strand, within GFF5683
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 56,709 + GFF5681 0.50 +1.4 56,709 + GFF5681 0.50 -0.4 56,709 + GFF5681 0.50 -0.4 56,709 + GFF5681 0.50 -1.3 56,710 - GFF5681 0.50 -1.0 56,710 - GFF5681 0.50 +0.6 56,710 - GFF5681 0.50 -2.7 56,710 - GFF5681 0.50 -2.0 56,730 + GFF5681 0.51 +2.4 56,730 + GFF5681 0.51 -1.3 56,730 + GFF5681 0.51 -2.8 56,730 + GFF5681 0.51 -0.4 56,730 + GFF5681 0.51 -0.7 56,730 + GFF5681 0.51 +1.9 56,730 + GFF5681 0.51 -1.7 56,730 + GFF5681 0.51 -0.4 56,730 + GFF5681 0.51 -0.2 56,730 + GFF5681 0.51 -1.2 56,730 + GFF5681 0.51 -1.6 56,923 - GFF5681 0.61 -0.2 56,923 - GFF5681 0.61 -0.6 57,015 - GFF5681 0.65 +0.6 57,237 + GFF5681 0.77 +1.0 57,238 - GFF5681 0.77 -1.5 57,238 - GFF5681 0.77 -1.8 57,238 - GFF5681 0.77 -2.3 57,238 - GFF5681 0.77 -0.4 57,238 - GFF5681 0.77 +0.9 57,238 - GFF5681 0.77 -0.9 57,238 - GFF5681 0.77 -0.1 57,285 + GFF5681 0.79 +0.6 57,285 + GFF5681 0.79 -0.2 57,285 + GFF5681 0.79 -0.6 57,286 - GFF5681 0.79 -2.4 57,286 - GFF5681 0.79 -0.4 57,286 - GFF5681 0.79 +0.7 57,286 - GFF5681 0.79 -0.1 57,286 - GFF5681 0.79 -0.1 57,286 - GFF5681 0.79 -3.0 57,286 - GFF5681 0.79 -2.7 57,737 + +0.9 57,738 - +0.9 57,758 + -0.5 57,758 + -0.2 57,758 + -1.4 57,758 + -0.8 57,759 - +0.6 57,759 - -2.5 58,004 + GFF5682 0.31 +1.2 58,004 + GFF5682 0.31 -1.8 58,004 + GFF5682 0.31 +0.5 58,004 + GFF5682 0.31 +0.6 58,005 - GFF5682 0.32 +1.1 58,005 - GFF5682 0.32 -1.1 58,005 - GFF5682 0.32 +0.9 58,019 + GFF5682 0.33 +1.0 58,019 + GFF5682 0.33 -1.3 58,019 + GFF5682 0.33 +0.9 58,019 + GFF5682 0.33 -0.3 58,020 - GFF5682 0.33 -0.8 58,091 + GFF5682 0.40 -1.4 58,091 + GFF5682 0.40 +2.0 58,091 + GFF5682 0.40 +1.3 58,092 - GFF5682 0.40 -0.1 58,092 - GFF5682 0.40 -2.3 58,092 - GFF5682 0.40 +0.0 58,344 - GFF5682 0.65 -0.3 58,344 - GFF5682 0.65 -2.4 58,344 - GFF5682 0.65 +3.1 58,592 + GFF5682 0.89 +0.8 58,592 + GFF5682 0.89 -0.9 58,592 + GFF5682 0.89 -0.6 58,592 + GFF5682 0.89 +3.4 58,592 + GFF5682 0.89 +2.2 58,593 - GFF5682 0.90 -2.0 58,593 - GFF5682 0.90 -1.4 58,593 - GFF5682 0.90 +0.9 58,593 - GFF5682 0.90 -3.0 58,593 - GFF5682 0.90 +0.1 58,593 - GFF5682 0.90 -1.4 58,593 - GFF5682 0.90 -3.2 58,593 - GFF5682 0.90 -0.8 58,593 - GFF5682 0.90 +0.4 58,593 - GFF5682 0.90 +1.2 58,598 + +0.6 58,598 + +2.2 58,598 + +0.9 58,598 + -0.7 58,598 + -2.5 58,599 - -1.4 58,599 - -0.4 58,709 + +1.0 58,709 + -1.9 58,709 + +0.5 58,709 + -0.6 58,716 + +1.5 58,716 + +2.1 58,716 + +0.2 58,716 + +1.6 58,716 + +1.4 58,716 + -0.1 58,716 + -1.1 58,717 - -0.3 58,717 - -2.2 58,717 - -0.4 58,717 - +0.6 58,717 - -0.6 58,812 - -0.4 58,812 - +0.8 58,812 - +1.3 58,812 - +0.9 58,815 + +1.9 58,815 + -1.7 58,837 - -3.1 59,085 + GFF5683 0.20 -0.0 59,085 + GFF5683 0.20 -0.0 59,085 + GFF5683 0.20 +2.5 59,085 + GFF5683 0.20 -0.1 59,085 + GFF5683 0.20 -1.6 59,085 + GFF5683 0.20 +0.2 59,085 + GFF5683 0.20 -0.1 59,085 + GFF5683 0.20 +0.7 59,085 + GFF5683 0.20 -2.9 59,085 + GFF5683 0.20 -2.4 59,085 + GFF5683 0.20 -4.3 59,085 + GFF5683 0.20 +0.1 59,085 + GFF5683 0.20 -1.5 59,085 + GFF5683 0.20 -0.0 59,086 - GFF5683 0.21 +0.3 59,086 - GFF5683 0.21 +0.1 59,086 - GFF5683 0.21 -1.8 59,086 - GFF5683 0.21 -0.8 59,086 - GFF5683 0.21 -0.8 59,086 - GFF5683 0.21 -0.1 59,086 - GFF5683 0.21 +0.6 59,086 - GFF5683 0.21 -0.6 59,086 - GFF5683 0.21 -0.1 59,086 - GFF5683 0.21 +0.2 59,086 - GFF5683 0.21 +0.3 59,086 - GFF5683 0.21 +0.0 59,086 - GFF5683 0.21 -0.4 59,086 - GFF5683 0.21 -1.8 59,086 - GFF5683 0.21 -1.0 59,086 - GFF5683 0.21 -1.5 59,086 - GFF5683 0.21 -2.0 59,086 - GFF5683 0.21 -2.5 59,086 - GFF5683 0.21 -2.3 59,086 - GFF5683 0.21 +1.0 59,086 - GFF5683 0.21 -1.5 59,112 + GFF5683 0.22 +4.7 59,112 + GFF5683 0.22 -0.5 59,112 + GFF5683 0.22 -1.4 59,112 + GFF5683 0.22 -1.1 59,112 + GFF5683 0.22 +0.4 59,112 + GFF5683 0.22 +0.2 59,112 + GFF5683 0.22 +0.3 59,112 + GFF5683 0.22 -2.0 59,112 + GFF5683 0.22 -2.2 59,112 + GFF5683 0.22 -1.0 59,112 + GFF5683 0.22 -2.2 59,113 - GFF5683 0.22 -0.2 59,113 - GFF5683 0.22 +3.2 59,113 - GFF5683 0.22 -0.9 59,206 - GFF5683 0.28 -0.4 59,415 + GFF5683 0.41 +2.5 59,415 + GFF5683 0.41 -0.1 59,415 + GFF5683 0.41 +2.1 59,416 - GFF5683 0.41 +1.6 59,416 - GFF5683 0.41 -0.6 59,470 - GFF5683 0.45 -0.7 59,470 - GFF5683 0.45 -0.2 59,487 + GFF5683 0.46 -1.6 59,487 + GFF5683 0.46 -1.4 59,487 + GFF5683 0.46 -1.9 59,487 + GFF5683 0.46 +1.3 59,487 + GFF5683 0.46 +1.3 59,488 - GFF5683 0.46 +0.6 59,488 - GFF5683 0.46 +0.2 59,496 + GFF5683 0.46 -0.2 59,496 + GFF5683 0.46 -0.5 59,496 + GFF5683 0.46 +1.9
Or see this region's nucleotide sequence