Strain Fitness in Variovorax sp. SCN45 around GFF5675

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
48,425	+				-2.3
48,425	+				-2.2
48,681	+		GFF5674	0.13	-1.0
48,681	+		GFF5674	0.13	-1.1
48,681	+		GFF5674	0.13	-0.6
48,681	+		GFF5674	0.13	+0.8
48,682	-		GFF5674	0.13	-1.6
48,682	-		GFF5674	0.13	-0.3
48,682	-		GFF5674	0.13	-0.6
48,696	+		GFF5674	0.15	-0.6
48,697	-		GFF5674	0.15	+0.1
48,697	-		GFF5674	0.15	-2.1
48,810	+		GFF5674	0.29	-0.1
48,810	+		GFF5674	0.29	-1.1
48,810	+		GFF5674	0.29	+3.0
48,810	+		GFF5674	0.29	+2.5
48,810	+		GFF5674	0.29	+2.9
48,810	+		GFF5674	0.29	-0.7
48,811	-		GFF5674	0.30	+0.6
48,811	-		GFF5674	0.30	-0.3
48,811	-		GFF5674	0.30	+2.2
48,811	-		GFF5674	0.30	-0.1
48,811	-		GFF5674	0.30	-2.0
49,430	+		GFF5675	0.14	-3.5
49,430	+		GFF5675	0.14	+0.6
49,430	+		GFF5675	0.14	+1.2
49,430	+		GFF5675	0.14	-1.3
49,430	+		GFF5675	0.14	+0.3
49,430	+		GFF5675	0.14	-2.5
49,430	+		GFF5675	0.14	+2.2
49,430	+		GFF5675	0.14	-2.5
49,430	+		GFF5675	0.14	+1.5
49,430	+		GFF5675	0.14	+0.1
49,431	-		GFF5675	0.14	+2.2
49,431	-		GFF5675	0.14	+0.2
49,431	-		GFF5675	0.14	+2.3
49,431	-		GFF5675	0.14	+0.7
49,431	-		GFF5675	0.14	-1.1
49,431	-		GFF5675	0.14	+0.0
49,431	-		GFF5675	0.14	-1.3
49,431	-		GFF5675	0.14	+0.5
49,538	+		GFF5675	0.41	-1.6
49,538	+		GFF5675	0.41	-0.2
49,538	+		GFF5675	0.41	+0.9
49,538	+		GFF5675	0.41	-0.8
49,538	+		GFF5675	0.41	-1.9
49,538	+		GFF5675	0.41	-2.3
49,538	+		GFF5675	0.41	-1.5
49,539	-		GFF5675	0.41	-0.4
49,539	-		GFF5675	0.41	-2.6
49,539	-		GFF5675	0.41	-0.3
49,539	-		GFF5675	0.41	+2.2
49,539	-		GFF5675	0.41	-0.1
49,539	-		GFF5675	0.41	-3.4
49,539	-		GFF5675	0.41	-2.0
49,679	+		GFF5675	0.75	-3.7
49,679	+		GFF5675	0.75	-1.0
49,679	+		GFF5675	0.75	-2.7
49,679	+		GFF5675	0.75	-0.6
49,679	+		GFF5675	0.75	-3.5
49,679	+		GFF5675	0.75	-4.2
49,680	-		GFF5675	0.75	+0.6
49,680	-		GFF5675	0.75	-2.0
49,680	-		GFF5675	0.75	-1.4
49,680	-		GFF5675	0.75	-0.1
49,680	-		GFF5675	0.75	-2.7
49,680	-		GFF5675	0.75	-1.4
49,680	-		GFF5675	0.75	-0.6
49,680	-		GFF5675	0.75	-2.0
49,767	+				-1.7
49,768	-				+0.2
49,798	+				-1.6
49,798	+				-0.8
49,798	+				-3.6
49,798	+				-1.4
49,798	+				-1.8
49,799	-				-3.2
49,799	-				-4.4
50,041	+		GFF5676	0.44	-2.0
50,041	+		GFF5676	0.44	-1.8
50,041	+		GFF5676	0.44	-2.8
50,041	+		GFF5676	0.44	-2.7
50,042	-		GFF5676	0.44	+0.2
50,042	-		GFF5676	0.44	-3.4
50,146	+		GFF5676	0.61	-0.4
50,146	+		GFF5676	0.61	-0.1
50,146	+		GFF5676	0.61	-3.0
50,146	+		GFF5676	0.61	-3.4
50,147	-		GFF5676	0.61	+0.2
50,147	-		GFF5676	0.61	-0.6
50,147	-		GFF5676	0.61	-1.4
50,147	-		GFF5676	0.61	-1.5
50,233	+		GFF5676	0.75	-1.0
50,233	+		GFF5676	0.75	-3.3
50,233	+		GFF5676	0.75	-1.9
50,234	-		GFF5676	0.75	-0.9
50,254	+		GFF5676	0.78	-1.7
50,254	+		GFF5676	0.78	-3.3
50,254	+		GFF5676	0.78	-0.1
50,254	+		GFF5676	0.78	+0.6
50,254	+		GFF5676	0.78	-2.7
50,255	-		GFF5676	0.79	-1.3
50,255	-		GFF5676	0.79	-1.1
50,255	-		GFF5676	0.79	-1.3
50,299	+		GFF5676	0.86	-1.8
50,299	+		GFF5676	0.86	-2.7
50,299	+		GFF5676	0.86	-1.0
50,300	-		GFF5676	0.86	-2.0
50,408	+				-1.4
50,408	+				-1.5
50,408	+				+0.2
50,409	-				-0.1
50,409	-				-1.9
50,409	-				+2.3
50,409	-				+0.3
50,409	-				-1.5
50,409	-				-1.8
50,409	-				-1.5
50,409	-				-1.0
50,409	-				-1.6
50,411	+				-2.7
50,411	+				-1.8
50,411	+				-3.0
50,411	+				-1.4
50,411	+				-1.6
50,411	+				-1.5
50,411	+				+0.6
50,412	-				+0.2
50,412	-				-1.2
50,412	-				-3.0
50,412	-				-2.6
50,412	-				-3.3
50,412	-				-3.0
50,412	-				-0.6
50,480	+				-0.8
50,481	-				-2.4
50,481	-				-2.0
50,481	-				+1.2
50,481	-				-2.9
50,492	+				-0.4
50,492	+				+1.2
50,492	+				-0.7
50,492	+				-2.5
50,492	+				-1.3
50,492	+				-3.2
50,493	-				-0.5
50,493	-				+0.5
50,493	-				-1.4
50,493	-				+0.5
50,493	-				-4.5
50,502	+				-0.7
50,502	+				-2.0
50,502	+				-1.8
50,502	+				-1.0
50,502	+				-1.0
50,502	+				-1.6
50,502	+				+0.2
50,503	-				-3.7
50,503	-				-1.0
50,503	-				-2.3
50,503	-				-2.5
50,503	-				-0.6
50,503	-				-0.1
50,503	-				-2.7
50,503	-				-1.4
50,503	-				-0.1
50,735	+		GFF5677	0.16	-1.4
50,735	+		GFF5677	0.16	-1.8
50,735	+		GFF5677	0.16	+0.1
50,735	+		GFF5677	0.16	-3.4
50,736	-		GFF5677	0.16	-2.0
50,736	-		GFF5677	0.16	-2.1
50,736	-		GFF5677	0.16	-3.0
50,736	-		GFF5677	0.16	-0.8