Strain Fitness in Variovorax sp. SCN45 around GFF5512

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5511 and GFF5512 are separated by 36 nucleotidesGFF5512 and GFF5513 overlap by 4 nucleotides GFF5511 - FIG000875: Thioredoxin domain-containing protein EC-YbbN, at 141,849 to 142,769 GFF5511 GFF5512 - N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18), at 142,806 to 143,360 GFF5512 GFF5513 - N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18), at 143,357 to 144,547 GFF5513 Position (kb) 142 143 144Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 141.883 kb on + strandat 141.883 kb on + strandat 141.883 kb on + strandat 141.883 kb on + strandat 141.883 kb on + strandat 141.883 kb on + strandat 141.884 kb on - strandat 141.884 kb on - strandat 141.884 kb on - strandat 141.970 kb on + strand, within GFF5511at 141.970 kb on + strand, within GFF5511at 141.970 kb on + strand, within GFF5511at 141.970 kb on + strand, within GFF5511at 141.970 kb on + strand, within GFF5511at 141.970 kb on + strand, within GFF5511at 141.970 kb on + strand, within GFF5511at 141.970 kb on + strand, within GFF5511at 141.970 kb on + strand, within GFF5511at 141.970 kb on + strand, within GFF5511at 141.971 kb on - strand, within GFF5511at 141.971 kb on - strand, within GFF5511at 141.971 kb on - strand, within GFF5511at 141.971 kb on - strand, within GFF5511at 141.971 kb on - strand, within GFF5511at 141.971 kb on - strand, within GFF5511at 141.971 kb on - strand, within GFF5511at 141.971 kb on - strand, within GFF5511at 141.971 kb on - strand, within GFF5511at 141.971 kb on - strand, within GFF5511at 141.971 kb on - strand, within GFF5511at 141.971 kb on - strand, within GFF5511at 141.971 kb on - strand, within GFF5511at 141.971 kb on - strand, within GFF5511at 141.971 kb on - strand, within GFF5511at 141.971 kb on - strand, within GFF5511at 141.971 kb on - strand, within GFF5511at 141.971 kb on - strand, within GFF5511at 141.971 kb on - strand, within GFF5511at 141.971 kb on - strand, within GFF5511at 142.297 kb on + strand, within GFF5511at 142.297 kb on + strand, within GFF5511at 142.297 kb on + strand, within GFF5511at 142.297 kb on + strand, within GFF5511at 142.297 kb on + strand, within GFF5511at 142.297 kb on + strand, within GFF5511at 142.297 kb on + strand, within GFF5511at 142.297 kb on + strand, within GFF5511at 142.297 kb on + strand, within GFF5511at 142.297 kb on + strand, within GFF5511at 142.297 kb on + strand, within GFF5511at 142.297 kb on + strand, within GFF5511at 142.297 kb on + strand, within GFF5511at 142.298 kb on - strand, within GFF5511at 142.298 kb on - strand, within GFF5511at 142.298 kb on - strand, within GFF5511at 142.298 kb on - strand, within GFF5511at 142.298 kb on - strand, within GFF5511at 142.298 kb on - strand, within GFF5511at 142.298 kb on - strand, within GFF5511at 142.298 kb on - strand, within GFF5511at 142.298 kb on - strand, within GFF5511at 142.298 kb on - strand, within GFF5511at 142.298 kb on - strand, within GFF5511at 142.627 kb on + strand, within GFF5511at 142.627 kb on + strand, within GFF5511at 142.628 kb on - strand, within GFF5511at 142.628 kb on - strand, within GFF5511at 142.793 kb on + strandat 142.793 kb on + strandat 142.794 kb on - strandat 142.831 kb on + strandat 142.831 kb on + strandat 142.831 kb on + strandat 142.831 kb on + strandat 142.831 kb on + strandat 142.832 kb on - strandat 142.832 kb on - strandat 142.832 kb on - strandat 142.832 kb on - strandat 142.832 kb on - strandat 142.832 kb on - strandat 142.832 kb on - strandat 142.956 kb on + strand, within GFF5512at 142.957 kb on - strand, within GFF5512at 143.109 kb on + strand, within GFF5512at 143.109 kb on + strand, within GFF5512at 143.109 kb on + strand, within GFF5512at 143.109 kb on + strand, within GFF5512at 143.109 kb on + strand, within GFF5512at 143.109 kb on + strand, within GFF5512at 143.109 kb on + strand, within GFF5512at 143.109 kb on + strand, within GFF5512at 143.110 kb on - strand, within GFF5512at 143.110 kb on - strand, within GFF5512at 143.459 kb on + strandat 143.459 kb on + strandat 143.534 kb on + strand, within GFF5513at 143.534 kb on + strand, within GFF5513at 144.107 kb on + strand, within GFF5513at 144.107 kb on + strand, within GFF5513at 144.107 kb on + strand, within GFF5513at 144.107 kb on + strand, within GFF5513at 144.107 kb on + strand, within GFF5513at 144.200 kb on + strand, within GFF5513at 144.200 kb on + strand, within GFF5513

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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141,883 + +0.3
141,883 + -0.2
141,883 + -0.4
141,883 + -0.6
141,883 + -0.4
141,883 + +0.5
141,884 - -1.3
141,884 - -1.8
141,884 - +0.3
141,970 + GFF5511 0.13 -0.3
141,970 + GFF5511 0.13 -3.2
141,970 + GFF5511 0.13 +0.2
141,970 + GFF5511 0.13 -0.5
141,970 + GFF5511 0.13 -0.3
141,970 + GFF5511 0.13 -0.5
141,970 + GFF5511 0.13 -0.8
141,970 + GFF5511 0.13 +0.1
141,970 + GFF5511 0.13 +1.0
141,970 + GFF5511 0.13 -2.0
141,971 - GFF5511 0.13 +0.1
141,971 - GFF5511 0.13 -2.4
141,971 - GFF5511 0.13 +0.2
141,971 - GFF5511 0.13 +0.8
141,971 - GFF5511 0.13 -2.1
141,971 - GFF5511 0.13 +1.1
141,971 - GFF5511 0.13 -0.7
141,971 - GFF5511 0.13 -1.5
141,971 - GFF5511 0.13 +1.0
141,971 - GFF5511 0.13 -0.0
141,971 - GFF5511 0.13 -1.7
141,971 - GFF5511 0.13 +2.2
141,971 - GFF5511 0.13 -1.0
141,971 - GFF5511 0.13 +0.8
141,971 - GFF5511 0.13 -0.5
141,971 - GFF5511 0.13 +0.7
141,971 - GFF5511 0.13 -1.2
141,971 - GFF5511 0.13 -1.6
141,971 - GFF5511 0.13 +0.3
141,971 - GFF5511 0.13 -2.5
142,297 + GFF5511 0.49 -1.0
142,297 + GFF5511 0.49 +1.7
142,297 + GFF5511 0.49 +0.4
142,297 + GFF5511 0.49 -1.9
142,297 + GFF5511 0.49 -0.5
142,297 + GFF5511 0.49 +0.3
142,297 + GFF5511 0.49 +1.5
142,297 + GFF5511 0.49 -3.0
142,297 + GFF5511 0.49 -1.1
142,297 + GFF5511 0.49 +0.8
142,297 + GFF5511 0.49 +0.5
142,297 + GFF5511 0.49 +0.2
142,297 + GFF5511 0.49 +1.5
142,298 - GFF5511 0.49 -0.6
142,298 - GFF5511 0.49 +0.8
142,298 - GFF5511 0.49 +0.7
142,298 - GFF5511 0.49 -1.6
142,298 - GFF5511 0.49 -0.7
142,298 - GFF5511 0.49 -0.5
142,298 - GFF5511 0.49 -0.7
142,298 - GFF5511 0.49 -0.0
142,298 - GFF5511 0.49 +0.7
142,298 - GFF5511 0.49 +0.5
142,298 - GFF5511 0.49 -0.6
142,627 + GFF5511 0.84 -0.9
142,627 + GFF5511 0.84 -3.6
142,628 - GFF5511 0.85 +0.3
142,628 - GFF5511 0.85 -1.3
142,793 + -2.0
142,793 + +1.5
142,794 - -1.0
142,831 + -2.6
142,831 + -0.6
142,831 + -1.0
142,831 + -0.3
142,831 + -3.6
142,832 - -0.8
142,832 - -2.3
142,832 - -1.7
142,832 - -2.2
142,832 - -3.3
142,832 - -1.9
142,832 - -3.2
142,956 + GFF5512 0.27 -2.2
142,957 - GFF5512 0.27 -4.6
143,109 + GFF5512 0.55 -1.3
143,109 + GFF5512 0.55 -4.1
143,109 + GFF5512 0.55 -3.2
143,109 + GFF5512 0.55 -1.0
143,109 + GFF5512 0.55 -4.3
143,109 + GFF5512 0.55 -5.1
143,109 + GFF5512 0.55 -4.4
143,109 + GFF5512 0.55 -3.3
143,110 - GFF5512 0.55 -1.4
143,110 - GFF5512 0.55 -2.0
143,459 + -3.0
143,459 + -1.9
143,534 + GFF5513 0.15 -1.7
143,534 + GFF5513 0.15 -1.3
144,107 + GFF5513 0.63 -3.1
144,107 + GFF5513 0.63 -2.5
144,107 + GFF5513 0.63 -3.2
144,107 + GFF5513 0.63 -2.8
144,107 + GFF5513 0.63 -2.9
144,200 + GFF5513 0.71 -3.6
144,200 + GFF5513 0.71 -2.1

Or see this region's nucleotide sequence