Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5473 and GFF5474 are separated by 4 nucleotides GFF5474 and GFF5475 are separated by 53 nucleotides
GFF5473 - hypothetical protein, at 101,940 to 104,396
GFF5473
GFF5474 - no description, at 104,401 to 104,607
GFF5474
GFF5475 - Uncharacterized MFS-type transporter, at 104,661 to 106,286
GFF5475
Position (kb) 104
105 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 103.446 kb on + strand, within GFF5473 at 103.777 kb on + strand, within GFF5473 at 103.778 kb on - strand, within GFF5473 at 103.778 kb on - strand, within GFF5473 at 103.919 kb on + strand, within GFF5473 at 103.919 kb on + strand, within GFF5473 at 103.960 kb on + strand, within GFF5473 at 103.961 kb on - strand, within GFF5473 at 103.961 kb on - strand, within GFF5473 at 103.961 kb on - strand, within GFF5473 at 103.961 kb on - strand, within GFF5473 at 103.961 kb on - strand, within GFF5473 at 103.961 kb on - strand, within GFF5473 at 104.015 kb on + strand, within GFF5473 at 104.015 kb on + strand, within GFF5473 at 104.015 kb on + strand, within GFF5473 at 104.015 kb on + strand, within GFF5473 at 104.016 kb on - strand, within GFF5473 at 104.016 kb on - strand, within GFF5473 at 104.016 kb on - strand, within GFF5473 at 104.016 kb on - strand, within GFF5473 at 104.016 kb on - strand, within GFF5473 at 104.210 kb on + strand at 104.210 kb on + strand at 104.417 kb on + strand at 104.417 kb on + strand at 104.417 kb on + strand at 104.417 kb on + strand at 104.418 kb on - strand at 104.418 kb on - strand at 104.418 kb on - strand at 104.418 kb on - strand at 104.418 kb on - strand at 104.534 kb on + strand, within GFF5474 at 104.534 kb on + strand, within GFF5474 at 104.534 kb on + strand, within GFF5474 at 104.535 kb on - strand, within GFF5474 at 104.560 kb on + strand, within GFF5474 at 104.560 kb on + strand, within GFF5474 at 104.560 kb on + strand, within GFF5474 at 104.560 kb on + strand, within GFF5474 at 104.677 kb on + strand at 104.677 kb on + strand at 104.678 kb on - strand at 104.812 kb on + strand at 104.812 kb on + strand at 104.812 kb on + strand at 104.812 kb on + strand at 104.812 kb on + strand at 104.813 kb on - strand at 104.813 kb on - strand at 104.814 kb on - strand at 105.184 kb on + strand, within GFF5475 at 105.184 kb on + strand, within GFF5475 at 105.184 kb on + strand, within GFF5475 at 105.185 kb on - strand, within GFF5475 at 105.185 kb on - strand, within GFF5475
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 103,446 + GFF5473 0.61 +0.2 103,777 + GFF5473 0.75 +1.0 103,778 - GFF5473 0.75 -1.4 103,778 - GFF5473 0.75 +0.6 103,919 + GFF5473 0.81 +0.5 103,919 + GFF5473 0.81 -0.0 103,960 + GFF5473 0.82 +0.2 103,961 - GFF5473 0.82 +1.1 103,961 - GFF5473 0.82 +0.6 103,961 - GFF5473 0.82 +0.4 103,961 - GFF5473 0.82 +0.6 103,961 - GFF5473 0.82 -0.0 103,961 - GFF5473 0.82 -0.7 104,015 + GFF5473 0.84 -2.5 104,015 + GFF5473 0.84 +0.3 104,015 + GFF5473 0.84 -0.1 104,015 + GFF5473 0.84 -0.3 104,016 - GFF5473 0.84 +0.8 104,016 - GFF5473 0.84 -0.7 104,016 - GFF5473 0.84 -0.4 104,016 - GFF5473 0.84 +1.3 104,016 - GFF5473 0.84 -0.0 104,210 + -0.4 104,210 + +2.4 104,417 + -1.3 104,417 + -0.8 104,417 + -2.7 104,417 + -0.0 104,418 - -0.5 104,418 - -0.1 104,418 - -0.0 104,418 - -3.0 104,418 - -0.8 104,534 + GFF5474 0.64 +1.0 104,534 + GFF5474 0.64 +0.9 104,534 + GFF5474 0.64 -1.1 104,535 - GFF5474 0.65 -0.0 104,560 + GFF5474 0.77 -0.1 104,560 + GFF5474 0.77 -0.9 104,560 + GFF5474 0.77 -1.9 104,560 + GFF5474 0.77 +1.5 104,677 + -2.1 104,677 + -0.6 104,678 - +2.2 104,812 + -0.5 104,812 + -1.5 104,812 + +0.1 104,812 + +0.2 104,812 + -1.7 104,813 - +0.7 104,813 - -0.5 104,814 - +1.5 105,184 + GFF5475 0.32 -0.6 105,184 + GFF5475 0.32 -1.7 105,184 + GFF5475 0.32 +1.0 105,185 - GFF5475 0.32 -0.8 105,185 - GFF5475 0.32 -1.2
Or see this region's nucleotide sequence