Strain Fitness in Variovorax sp. SCN45 around GFF5326

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5325 and GFF5326 overlap by 4 nucleotidesGFF5326 and GFF5327 overlap by 4 nucleotides GFF5325 - 3-dehydroquinate synthase (EC 4.2.3.4), at 202,447 to 203,556 GFF5325 GFF5326 - Deoxyguanosinetriphosphate triphosphohydrolase (EC 3.1.5.1), at 203,553 to 204,683 GFF5326 GFF5327 - Uncharacterized MFS-type transporter, at 204,680 to 205,936 GFF5327 Position (kb) 203 204 205Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 202.618 kb on + strand, within GFF5325at 202.826 kb on - strand, within GFF5325at 202.826 kb on - strand, within GFF5325at 202.946 kb on - strand, within GFF5325at 203.047 kb on + strand, within GFF5325at 203.047 kb on + strand, within GFF5325at 203.047 kb on + strand, within GFF5325at 203.248 kb on + strand, within GFF5325at 203.414 kb on - strand, within GFF5325at 203.568 kb on + strandat 203.568 kb on + strandat 203.568 kb on + strandat 203.568 kb on + strandat 203.569 kb on - strandat 203.569 kb on - strandat 203.569 kb on - strandat 203.569 kb on - strandat 203.569 kb on - strandat 203.569 kb on - strandat 203.569 kb on - strandat 203.569 kb on - strandat 203.692 kb on - strand, within GFF5326at 203.971 kb on - strand, within GFF5326at 203.971 kb on - strand, within GFF5326at 203.971 kb on - strand, within GFF5326at 204.062 kb on + strand, within GFF5326at 204.063 kb on - strand, within GFF5326at 204.144 kb on + strand, within GFF5326at 204.144 kb on + strand, within GFF5326at 204.145 kb on - strand, within GFF5326at 204.282 kb on + strand, within GFF5326at 204.282 kb on + strand, within GFF5326at 204.282 kb on + strand, within GFF5326at 204.283 kb on - strand, within GFF5326at 204.283 kb on - strand, within GFF5326at 204.283 kb on - strand, within GFF5326at 204.318 kb on + strand, within GFF5326at 204.318 kb on + strand, within GFF5326at 204.319 kb on - strand, within GFF5326at 204.537 kb on + strand, within GFF5326at 204.537 kb on + strand, within GFF5326at 204.537 kb on + strand, within GFF5326at 204.537 kb on + strand, within GFF5326at 204.537 kb on + strand, within GFF5326at 204.538 kb on - strand, within GFF5326at 204.538 kb on - strand, within GFF5326at 204.538 kb on - strand, within GFF5326at 204.538 kb on - strand, within GFF5326at 204.571 kb on - strandat 204.571 kb on - strandat 204.571 kb on - strandat 204.609 kb on + strandat 204.609 kb on + strandat 204.610 kb on - strandat 204.610 kb on - strandat 204.610 kb on - strandat 204.931 kb on + strand, within GFF5327at 204.931 kb on + strand, within GFF5327at 204.931 kb on + strand, within GFF5327at 204.931 kb on + strand, within GFF5327at 204.932 kb on - strand, within GFF5327at 205.008 kb on + strand, within GFF5327at 205.008 kb on + strand, within GFF5327at 205.008 kb on + strand, within GFF5327at 205.008 kb on + strand, within GFF5327at 205.008 kb on + strand, within GFF5327at 205.008 kb on + strand, within GFF5327at 205.009 kb on - strand, within GFF5327at 205.009 kb on - strand, within GFF5327at 205.009 kb on - strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.379 kb on + strand, within GFF5327at 205.379 kb on + strand, within GFF5327at 205.379 kb on + strand, within GFF5327at 205.379 kb on + strand, within GFF5327at 205.380 kb on - strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.425 kb on - strand, within GFF5327at 205.425 kb on - strand, within GFF5327at 205.649 kb on + strand, within GFF5327at 205.649 kb on + strand, within GFF5327at 205.649 kb on + strand, within GFF5327at 205.649 kb on + strand, within GFF5327at 205.649 kb on + strand, within GFF5327at 205.650 kb on - strand, within GFF5327at 205.650 kb on - strand, within GFF5327at 205.650 kb on - strand, within GFF5327

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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202,618 + GFF5325 0.15 +2.3
202,826 - GFF5325 0.34 +2.3
202,826 - GFF5325 0.34 +2.3
202,946 - GFF5325 0.45 +0.7
203,047 + GFF5325 0.54 -0.1
203,047 + GFF5325 0.54 +0.7
203,047 + GFF5325 0.54 -0.6
203,248 + GFF5325 0.72 +1.3
203,414 - GFF5325 0.87 +1.3
203,568 + -1.1
203,568 + +0.8
203,568 + +1.0
203,568 + +0.8
203,569 - +0.8
203,569 - -1.2
203,569 - -1.1
203,569 - +0.9
203,569 - -1.3
203,569 - -0.6
203,569 - +1.0
203,569 - +0.9
203,692 - GFF5326 0.12 -0.6
203,971 - GFF5326 0.37 +0.5
203,971 - GFF5326 0.37 +0.3
203,971 - GFF5326 0.37 -1.1
204,062 + GFF5326 0.45 -3.0
204,063 - GFF5326 0.45 +1.6
204,144 + GFF5326 0.52 -0.1
204,144 + GFF5326 0.52 +1.1
204,145 - GFF5326 0.52 -1.9
204,282 + GFF5326 0.64 -0.1
204,282 + GFF5326 0.64 +0.0
204,282 + GFF5326 0.64 -2.1
204,283 - GFF5326 0.65 +4.3
204,283 - GFF5326 0.65 +2.3
204,283 - GFF5326 0.65 -0.6
204,318 + GFF5326 0.68 -0.7
204,318 + GFF5326 0.68 -1.3
204,319 - GFF5326 0.68 -0.8
204,537 + GFF5326 0.87 +0.6
204,537 + GFF5326 0.87 -0.3
204,537 + GFF5326 0.87 +1.9
204,537 + GFF5326 0.87 +1.1
204,537 + GFF5326 0.87 -0.4
204,538 - GFF5326 0.87 -2.6
204,538 - GFF5326 0.87 -1.3
204,538 - GFF5326 0.87 +0.3
204,538 - GFF5326 0.87 +0.3
204,571 - +3.3
204,571 - -0.8
204,571 - -2.8
204,609 + -2.3
204,609 + -1.6
204,610 - -0.4
204,610 - -1.7
204,610 - -2.6
204,931 + GFF5327 0.20 +0.7
204,931 + GFF5327 0.20 +3.3
204,931 + GFF5327 0.20 +1.3
204,931 + GFF5327 0.20 -0.2
204,932 - GFF5327 0.20 +2.6
205,008 + GFF5327 0.26 +1.6
205,008 + GFF5327 0.26 +0.4
205,008 + GFF5327 0.26 -0.8
205,008 + GFF5327 0.26 -1.0
205,008 + GFF5327 0.26 -1.2
205,008 + GFF5327 0.26 +1.7
205,009 - GFF5327 0.26 -3.0
205,009 - GFF5327 0.26 +0.4
205,009 - GFF5327 0.26 +0.7
205,130 + GFF5327 0.36 +0.3
205,130 + GFF5327 0.36 +0.7
205,130 + GFF5327 0.36 +1.2
205,130 + GFF5327 0.36 +1.5
205,130 + GFF5327 0.36 -0.1
205,130 + GFF5327 0.36 +1.8
205,130 + GFF5327 0.36 -0.6
205,130 + GFF5327 0.36 +0.6
205,130 + GFF5327 0.36 +0.7
205,130 + GFF5327 0.36 -2.1
205,130 + GFF5327 0.36 -0.4
205,130 + GFF5327 0.36 -0.1
205,130 + GFF5327 0.36 +0.8
205,130 + GFF5327 0.36 -1.2
205,130 + GFF5327 0.36 +0.3
205,130 + GFF5327 0.36 -2.3
205,130 + GFF5327 0.36 -1.7
205,130 + GFF5327 0.36 +0.3
205,130 + GFF5327 0.36 -0.6
205,130 + GFF5327 0.36 +0.1
205,130 + GFF5327 0.36 +0.6
205,130 + GFF5327 0.36 -1.0
205,130 + GFF5327 0.36 +1.5
205,130 + GFF5327 0.36 +0.9
205,130 + GFF5327 0.36 +0.3
205,130 + GFF5327 0.36 +1.4
205,130 + GFF5327 0.36 -1.4
205,131 - GFF5327 0.36 +2.3
205,131 - GFF5327 0.36 -0.6
205,131 - GFF5327 0.36 +0.8
205,131 - GFF5327 0.36 -0.7
205,131 - GFF5327 0.36 +2.3
205,131 - GFF5327 0.36 -1.4
205,131 - GFF5327 0.36 +0.1
205,131 - GFF5327 0.36 +0.4
205,131 - GFF5327 0.36 +0.2
205,131 - GFF5327 0.36 -0.2
205,131 - GFF5327 0.36 +0.7
205,131 - GFF5327 0.36 -0.4
205,131 - GFF5327 0.36 -0.4
205,131 - GFF5327 0.36 +2.3
205,131 - GFF5327 0.36 -3.1
205,131 - GFF5327 0.36 -1.1
205,131 - GFF5327 0.36 -1.9
205,131 - GFF5327 0.36 -2.8
205,131 - GFF5327 0.36 +0.2
205,131 - GFF5327 0.36 +0.1
205,131 - GFF5327 0.36 -0.7
205,379 + GFF5327 0.56 -0.3
205,379 + GFF5327 0.56 -0.5
205,379 + GFF5327 0.56 -1.1
205,379 + GFF5327 0.56 +1.3
205,380 - GFF5327 0.56 -0.4
205,424 + GFF5327 0.59 +0.8
205,424 + GFF5327 0.59 -1.8
205,424 + GFF5327 0.59 -2.1
205,424 + GFF5327 0.59 +0.6
205,424 + GFF5327 0.59 -2.6
205,424 + GFF5327 0.59 +2.3
205,424 + GFF5327 0.59 -1.6
205,424 + GFF5327 0.59 -0.3
205,424 + GFF5327 0.59 -0.9
205,424 + GFF5327 0.59 +0.3
205,425 - GFF5327 0.59 -2.6
205,425 - GFF5327 0.59 +0.3
205,649 + GFF5327 0.77 -0.1
205,649 + GFF5327 0.77 -0.4
205,649 + GFF5327 0.77 -0.3
205,649 + GFF5327 0.77 -1.6
205,649 + GFF5327 0.77 +0.5
205,650 - GFF5327 0.77 +0.1
205,650 - GFF5327 0.77 +1.1
205,650 - GFF5327 0.77 -1.7

Or see this region's nucleotide sequence