Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5300 and GFF5301 are separated by 17 nucleotides GFF5301 and GFF5302 are separated by 2 nucleotides GFF5302 and GFF5303 are separated by 174 nucleotides GFF5303 and GFF5304 are separated by 1 nucleotides
GFF5300 - ABC transporter, permease protein (cluster 10, nitrate/sulfonate/bicarbonate), at 175,998 to 176,873
GFF5300
GFF5301 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 176,891 to 177,709
GFF5301
GFF5302 - ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 177,712 to 178,752
GFF5302
GFF5303 - Tricarboxylate transport transcriptional regulator TctD, at 178,927 to 179,601
GFF5303
GFF5304 - no description, at 179,603 to 181,039
GFF5304
Position (kb) 177
178
179 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 177.006 kb on + strand, within GFF5301 at 177.006 kb on + strand, within GFF5301 at 177.007 kb on - strand, within GFF5301 at 177.743 kb on + strand at 177.744 kb on - strand at 177.755 kb on + strand at 177.756 kb on - strand at 177.800 kb on + strand at 177.801 kb on - strand at 177.896 kb on + strand, within GFF5302 at 177.897 kb on - strand, within GFF5302 at 177.917 kb on + strand, within GFF5302 at 177.917 kb on + strand, within GFF5302 at 177.918 kb on - strand, within GFF5302 at 177.971 kb on + strand, within GFF5302 at 177.971 kb on + strand, within GFF5302 at 177.971 kb on + strand, within GFF5302 at 177.971 kb on + strand, within GFF5302 at 177.972 kb on - strand, within GFF5302 at 177.972 kb on - strand, within GFF5302 at 177.972 kb on - strand, within GFF5302 at 177.972 kb on - strand, within GFF5302 at 177.972 kb on - strand, within GFF5302 at 178.049 kb on + strand, within GFF5302 at 178.049 kb on + strand, within GFF5302 at 178.049 kb on + strand, within GFF5302 at 178.050 kb on - strand, within GFF5302 at 178.050 kb on - strand, within GFF5302 at 178.067 kb on + strand, within GFF5302 at 178.067 kb on + strand, within GFF5302 at 178.245 kb on - strand, within GFF5302 at 178.280 kb on + strand, within GFF5302 at 178.475 kb on + strand, within GFF5302 at 178.475 kb on + strand, within GFF5302 at 178.475 kb on + strand, within GFF5302 at 178.475 kb on + strand, within GFF5302 at 178.476 kb on - strand, within GFF5302 at 178.476 kb on - strand, within GFF5302 at 178.476 kb on - strand, within GFF5302 at 178.580 kb on + strand, within GFF5302 at 178.580 kb on + strand, within GFF5302 at 178.580 kb on + strand, within GFF5302 at 178.581 kb on - strand, within GFF5302 at 178.613 kb on + strand, within GFF5302 at 178.614 kb on - strand, within GFF5302 at 178.770 kb on + strand at 178.770 kb on + strand at 178.770 kb on + strand at 178.770 kb on + strand at 178.771 kb on - strand at 178.771 kb on - strand at 178.817 kb on + strand at 178.818 kb on - strand at 178.871 kb on + strand at 178.897 kb on + strand at 178.897 kb on + strand at 178.897 kb on + strand at 178.898 kb on - strand at 179.059 kb on + strand, within GFF5303 at 179.059 kb on + strand, within GFF5303 at 179.060 kb on - strand, within GFF5303 at 179.219 kb on - strand, within GFF5303 at 179.219 kb on - strand, within GFF5303 at 179.219 kb on - strand, within GFF5303 at 179.326 kb on + strand, within GFF5303 at 179.326 kb on + strand, within GFF5303 at 179.327 kb on - strand, within GFF5303 at 179.459 kb on + strand, within GFF5303 at 179.459 kb on + strand, within GFF5303 at 179.503 kb on + strand, within GFF5303 at 179.503 kb on + strand, within GFF5303 at 179.503 kb on + strand, within GFF5303 at 179.503 kb on + strand, within GFF5303 at 179.503 kb on + strand, within GFF5303 at 179.503 kb on + strand, within GFF5303 at 179.503 kb on + strand, within GFF5303 at 179.503 kb on + strand, within GFF5303 at 179.503 kb on + strand, within GFF5303 at 179.503 kb on + strand, within GFF5303 at 179.503 kb on + strand, within GFF5303 at 179.503 kb on + strand, within GFF5303 at 179.503 kb on + strand, within GFF5303 at 179.503 kb on + strand, within GFF5303 at 179.503 kb on + strand, within GFF5303 at 179.504 kb on - strand, within GFF5303 at 179.504 kb on - strand, within GFF5303 at 179.504 kb on - strand, within GFF5303 at 179.504 kb on - strand, within GFF5303 at 179.504 kb on - strand, within GFF5303 at 179.504 kb on - strand, within GFF5303 at 179.504 kb on - strand, within GFF5303 at 179.504 kb on - strand, within GFF5303 at 179.504 kb on - strand, within GFF5303 at 179.504 kb on - strand, within GFF5303 at 179.504 kb on - strand, within GFF5303 at 179.573 kb on - strand at 179.599 kb on + strand at 179.599 kb on + strand at 179.600 kb on - strand at 179.721 kb on - strand at 179.721 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 177,006 + GFF5301 0.14 -1.7 177,006 + GFF5301 0.14 -2.1 177,007 - GFF5301 0.14 -2.9 177,743 + +1.1 177,744 - -3.5 177,755 + -0.4 177,756 - +0.6 177,800 + -3.3 177,801 - -1.1 177,896 + GFF5302 0.18 -1.9 177,897 - GFF5302 0.18 +0.3 177,917 + GFF5302 0.20 -0.9 177,917 + GFF5302 0.20 -1.3 177,918 - GFF5302 0.20 +0.2 177,971 + GFF5302 0.25 -0.9 177,971 + GFF5302 0.25 -3.7 177,971 + GFF5302 0.25 -0.3 177,971 + GFF5302 0.25 -1.0 177,972 - GFF5302 0.25 +0.9 177,972 - GFF5302 0.25 -0.9 177,972 - GFF5302 0.25 -1.9 177,972 - GFF5302 0.25 +0.5 177,972 - GFF5302 0.25 -1.3 178,049 + GFF5302 0.32 +0.4 178,049 + GFF5302 0.32 -1.1 178,049 + GFF5302 0.32 -4.2 178,050 - GFF5302 0.32 +1.7 178,050 - GFF5302 0.32 +0.3 178,067 + GFF5302 0.34 -0.0 178,067 + GFF5302 0.34 +0.3 178,245 - GFF5302 0.51 -0.4 178,280 + GFF5302 0.55 -1.4 178,475 + GFF5302 0.73 +1.4 178,475 + GFF5302 0.73 +1.3 178,475 + GFF5302 0.73 -1.9 178,475 + GFF5302 0.73 -1.3 178,476 - GFF5302 0.73 +0.5 178,476 - GFF5302 0.73 +0.2 178,476 - GFF5302 0.73 -1.3 178,580 + GFF5302 0.83 -0.6 178,580 + GFF5302 0.83 -1.7 178,580 + GFF5302 0.83 +0.6 178,581 - GFF5302 0.83 +0.2 178,613 + GFF5302 0.87 -0.4 178,614 - GFF5302 0.87 -0.8 178,770 + -0.4 178,770 + -0.5 178,770 + +0.7 178,770 + -1.4 178,771 - +1.8 178,771 - +0.1 178,817 + +1.1 178,818 - -1.1 178,871 + -0.1 178,897 + -0.7 178,897 + +1.9 178,897 + +2.3 178,898 - +0.8 179,059 + GFF5303 0.20 -0.3 179,059 + GFF5303 0.20 -1.6 179,060 - GFF5303 0.20 +1.2 179,219 - GFF5303 0.43 -1.1 179,219 - GFF5303 0.43 +1.4 179,219 - GFF5303 0.43 -0.3 179,326 + GFF5303 0.59 +0.4 179,326 + GFF5303 0.59 +1.3 179,327 - GFF5303 0.59 +0.3 179,459 + GFF5303 0.79 +0.7 179,459 + GFF5303 0.79 +0.4 179,503 + GFF5303 0.85 +0.7 179,503 + GFF5303 0.85 -0.3 179,503 + GFF5303 0.85 +0.3 179,503 + GFF5303 0.85 -0.3 179,503 + GFF5303 0.85 -0.7 179,503 + GFF5303 0.85 -2.3 179,503 + GFF5303 0.85 +0.1 179,503 + GFF5303 0.85 +0.7 179,503 + GFF5303 0.85 +1.0 179,503 + GFF5303 0.85 -0.2 179,503 + GFF5303 0.85 -0.3 179,503 + GFF5303 0.85 +0.1 179,503 + GFF5303 0.85 -2.7 179,503 + GFF5303 0.85 -2.2 179,503 + GFF5303 0.85 +0.6 179,504 - GFF5303 0.85 +1.3 179,504 - GFF5303 0.85 -2.1 179,504 - GFF5303 0.85 +1.1 179,504 - GFF5303 0.85 -2.1 179,504 - GFF5303 0.85 -2.8 179,504 - GFF5303 0.85 +0.6 179,504 - GFF5303 0.85 +0.7 179,504 - GFF5303 0.85 -2.3 179,504 - GFF5303 0.85 -1.1 179,504 - GFF5303 0.85 -2.8 179,504 - GFF5303 0.85 -0.2 179,573 - -0.9 179,599 + -1.8 179,599 + -1.7 179,600 - -1.6 179,721 - +0.4 179,721 - +1.3
Or see this region's nucleotide sequence