Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF527 and GFF528 are separated by 18 nucleotides GFF528 and GFF529 are separated by 42 nucleotides GFF529 and GFF530 are separated by 123 nucleotides GFF530 and GFF531 are separated by 25 nucleotides
GFF527 - Tricarboxylate transport sensor protein TctE, at 569,155 to 570,585
GFF527
GFF528 - Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog), at 570,604 to 571,038
GFF528
GFF529 - UDP-galactose-lipid carrier transferase (EC 2.-.-.-), at 571,081 to 571,887
GFF529
GFF530 - no description, at 572,011 to 572,193
GFF530
GFF531 - hypothetical protein, at 572,219 to 572,890
GFF531
Position (kb) 571
572 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 570.586 kb on + strand at 570.587 kb on - strand at 570.587 kb on - strand at 570.841 kb on + strand, within GFF528 at 570.841 kb on + strand, within GFF528 at 570.841 kb on + strand, within GFF528 at 570.841 kb on + strand, within GFF528 at 570.841 kb on + strand, within GFF528 at 570.842 kb on - strand, within GFF528 at 570.842 kb on - strand, within GFF528 at 570.842 kb on - strand, within GFF528 at 571.044 kb on + strand at 571.044 kb on + strand at 571.045 kb on - strand at 571.045 kb on - strand at 571.045 kb on - strand at 571.099 kb on + strand at 571.100 kb on - strand at 571.106 kb on + strand at 571.107 kb on - strand at 571.390 kb on + strand, within GFF529 at 571.390 kb on + strand, within GFF529 at 571.390 kb on + strand, within GFF529 at 571.390 kb on + strand, within GFF529 at 571.390 kb on + strand, within GFF529 at 571.390 kb on + strand, within GFF529 at 571.390 kb on + strand, within GFF529 at 571.391 kb on - strand, within GFF529 at 571.391 kb on - strand, within GFF529 at 571.391 kb on - strand, within GFF529 at 571.391 kb on - strand, within GFF529 at 571.391 kb on - strand, within GFF529 at 571.391 kb on - strand, within GFF529 at 571.391 kb on - strand, within GFF529 at 571.472 kb on + strand, within GFF529 at 571.472 kb on + strand, within GFF529 at 571.699 kb on + strand, within GFF529 at 571.699 kb on + strand, within GFF529 at 571.699 kb on + strand, within GFF529 at 571.711 kb on + strand, within GFF529 at 571.711 kb on + strand, within GFF529 at 571.711 kb on + strand, within GFF529 at 571.711 kb on + strand, within GFF529 at 571.711 kb on + strand, within GFF529 at 571.712 kb on - strand, within GFF529 at 571.712 kb on - strand, within GFF529 at 571.712 kb on - strand, within GFF529 at 571.763 kb on + strand, within GFF529 at 571.763 kb on + strand, within GFF529 at 571.764 kb on - strand, within GFF529 at 571.764 kb on - strand, within GFF529 at 571.764 kb on - strand, within GFF529 at 571.764 kb on - strand, within GFF529 at 571.764 kb on - strand, within GFF529 at 571.764 kb on - strand, within GFF529 at 571.885 kb on + strand at 571.885 kb on + strand at 571.885 kb on + strand at 571.885 kb on + strand at 571.885 kb on + strand at 571.885 kb on + strand at 571.885 kb on + strand at 571.885 kb on + strand at 571.885 kb on + strand at 571.885 kb on + strand at 571.885 kb on + strand at 571.885 kb on + strand at 571.886 kb on - strand at 571.886 kb on - strand at 571.886 kb on - strand at 571.886 kb on - strand at 571.886 kb on - strand at 571.886 kb on - strand at 571.886 kb on - strand at 571.886 kb on - strand at 571.886 kb on - strand at 571.886 kb on - strand at 571.886 kb on - strand at 571.919 kb on + strand at 571.920 kb on - strand at 571.920 kb on - strand at 571.936 kb on + strand at 571.937 kb on - strand at 571.961 kb on + strand at 571.961 kb on + strand at 571.961 kb on + strand at 571.961 kb on + strand at 571.961 kb on + strand at 571.961 kb on + strand at 571.961 kb on + strand at 571.962 kb on - strand at 571.962 kb on - strand at 571.962 kb on - strand at 571.962 kb on - strand at 571.975 kb on + strand at 572.021 kb on + strand at 572.022 kb on - strand at 572.101 kb on + strand, within GFF530 at 572.101 kb on + strand, within GFF530 at 572.102 kb on - strand, within GFF530 at 572.102 kb on - strand, within GFF530 at 572.179 kb on + strand at 572.179 kb on + strand at 572.179 kb on + strand at 572.179 kb on + strand at 572.179 kb on + strand at 572.179 kb on + strand at 572.179 kb on + strand at 572.179 kb on + strand at 572.180 kb on - strand at 572.180 kb on - strand at 572.204 kb on + strand at 572.204 kb on + strand at 572.205 kb on - strand at 572.205 kb on - strand at 572.205 kb on - strand at 572.210 kb on + strand at 572.210 kb on + strand at 572.210 kb on + strand at 572.210 kb on + strand at 572.210 kb on + strand at 572.210 kb on + strand at 572.210 kb on + strand at 572.210 kb on + strand at 572.210 kb on + strand at 572.210 kb on + strand at 572.211 kb on - strand at 572.211 kb on - strand at 572.211 kb on - strand at 572.211 kb on - strand at 572.211 kb on - strand at 572.211 kb on - strand at 572.211 kb on - strand at 572.211 kb on - strand at 572.211 kb on - strand at 572.211 kb on - strand at 572.311 kb on + strand, within GFF531 at 572.311 kb on + strand, within GFF531 at 572.311 kb on + strand, within GFF531 at 572.311 kb on + strand, within GFF531 at 572.312 kb on - strand, within GFF531 at 572.312 kb on - strand, within GFF531 at 572.312 kb on - strand, within GFF531 at 572.312 kb on - strand, within GFF531 at 572.313 kb on + strand, within GFF531 at 572.313 kb on + strand, within GFF531 at 572.313 kb on + strand, within GFF531 at 572.313 kb on + strand, within GFF531 at 572.313 kb on + strand, within GFF531 at 572.313 kb on + strand, within GFF531 at 572.313 kb on + strand, within GFF531 at 572.313 kb on + strand, within GFF531 at 572.313 kb on + strand, within GFF531 at 572.313 kb on + strand, within GFF531 at 572.313 kb on + strand, within GFF531 at 572.313 kb on + strand, within GFF531 at 572.314 kb on - strand, within GFF531 at 572.314 kb on - strand, within GFF531 at 572.314 kb on - strand, within GFF531 at 572.314 kb on - strand, within GFF531 at 572.315 kb on - strand, within GFF531 at 572.323 kb on - strand, within GFF531 at 572.323 kb on - strand, within GFF531 at 572.400 kb on + strand, within GFF531 at 572.400 kb on + strand, within GFF531 at 572.400 kb on + strand, within GFF531 at 572.400 kb on + strand, within GFF531 at 572.400 kb on + strand, within GFF531 at 572.400 kb on + strand, within GFF531 at 572.400 kb on + strand, within GFF531 at 572.400 kb on + strand, within GFF531 at 572.400 kb on + strand, within GFF531 at 572.400 kb on + strand, within GFF531 at 572.400 kb on + strand, within GFF531 at 572.400 kb on + strand, within GFF531 at 572.400 kb on + strand, within GFF531 at 572.400 kb on + strand, within GFF531 at 572.400 kb on + strand, within GFF531 at 572.401 kb on - strand, within GFF531 at 572.401 kb on - strand, within GFF531 at 572.401 kb on - strand, within GFF531 at 572.401 kb on - strand, within GFF531 at 572.401 kb on - strand, within GFF531 at 572.401 kb on - strand, within GFF531 at 572.401 kb on - strand, within GFF531 at 572.401 kb on - strand, within GFF531 at 572.401 kb on - strand, within GFF531 at 572.401 kb on - strand, within GFF531 at 572.401 kb on - strand, within GFF531 at 572.401 kb on - strand, within GFF531 at 572.401 kb on - strand, within GFF531 at 572.401 kb on - strand, within GFF531 at 572.401 kb on - strand, within GFF531 at 572.401 kb on - strand, within GFF531 at 572.430 kb on + strand, within GFF531 at 572.430 kb on + strand, within GFF531 at 572.430 kb on + strand, within GFF531 at 572.430 kb on + strand, within GFF531 at 572.430 kb on + strand, within GFF531 at 572.430 kb on + strand, within GFF531 at 572.431 kb on - strand, within GFF531 at 572.431 kb on - strand, within GFF531 at 572.431 kb on - strand, within GFF531 at 572.431 kb on - strand, within GFF531 at 572.461 kb on - strand, within GFF531 at 572.634 kb on + strand, within GFF531 at 572.634 kb on + strand, within GFF531 at 572.634 kb on + strand, within GFF531 at 572.634 kb on + strand, within GFF531 at 572.634 kb on + strand, within GFF531 at 572.635 kb on - strand, within GFF531 at 572.635 kb on - strand, within GFF531 at 572.745 kb on + strand, within GFF531 at 572.745 kb on + strand, within GFF531 at 572.745 kb on + strand, within GFF531 at 572.745 kb on + strand, within GFF531 at 572.746 kb on - strand, within GFF531 at 572.746 kb on - strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.787 kb on + strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531 at 572.788 kb on - strand, within GFF531
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 570,586 + +0.6 570,587 - +1.8 570,587 - -1.0 570,841 + GFF528 0.54 -1.4 570,841 + GFF528 0.54 -0.3 570,841 + GFF528 0.54 -0.2 570,841 + GFF528 0.54 -0.5 570,841 + GFF528 0.54 -2.8 570,842 - GFF528 0.55 -2.5 570,842 - GFF528 0.55 +0.5 570,842 - GFF528 0.55 +0.8 571,044 + -1.4 571,044 + -1.4 571,045 - -1.7 571,045 - -0.9 571,045 - -0.2 571,099 + +2.4 571,100 - -0.8 571,106 + +0.6 571,107 - +0.6 571,390 + GFF529 0.38 -0.5 571,390 + GFF529 0.38 +0.3 571,390 + GFF529 0.38 +0.8 571,390 + GFF529 0.38 -0.6 571,390 + GFF529 0.38 +0.6 571,390 + GFF529 0.38 -2.0 571,390 + GFF529 0.38 +0.2 571,391 - GFF529 0.38 +0.7 571,391 - GFF529 0.38 +0.9 571,391 - GFF529 0.38 -0.5 571,391 - GFF529 0.38 +1.8 571,391 - GFF529 0.38 +0.0 571,391 - GFF529 0.38 -0.6 571,391 - GFF529 0.38 -1.5 571,472 + GFF529 0.48 +0.1 571,472 + GFF529 0.48 -0.2 571,699 + GFF529 0.77 -1.0 571,699 + GFF529 0.77 -2.7 571,699 + GFF529 0.77 -0.3 571,711 + GFF529 0.78 -1.7 571,711 + GFF529 0.78 -0.4 571,711 + GFF529 0.78 +1.8 571,711 + GFF529 0.78 -2.1 571,711 + GFF529 0.78 +0.1 571,712 - GFF529 0.78 -4.0 571,712 - GFF529 0.78 +0.0 571,712 - GFF529 0.78 +1.1 571,763 + GFF529 0.85 -0.2 571,763 + GFF529 0.85 +2.7 571,764 - GFF529 0.85 +1.0 571,764 - GFF529 0.85 +0.4 571,764 - GFF529 0.85 -2.3 571,764 - GFF529 0.85 -0.5 571,764 - GFF529 0.85 +0.2 571,764 - GFF529 0.85 +0.0 571,885 + -0.7 571,885 + +0.6 571,885 + +1.3 571,885 + -0.5 571,885 + -1.3 571,885 + +0.1 571,885 + -0.6 571,885 + -0.6 571,885 + -0.3 571,885 + -2.3 571,885 + -0.8 571,885 + +0.3 571,886 - +1.7 571,886 - +0.7 571,886 - +1.8 571,886 - -1.4 571,886 - +0.2 571,886 - -0.2 571,886 - -1.0 571,886 - +0.9 571,886 - -0.4 571,886 - +0.0 571,886 - -2.7 571,919 + -1.2 571,920 - +0.2 571,920 - -0.5 571,936 + -2.2 571,937 - -2.5 571,961 + +0.8 571,961 + +0.7 571,961 + +1.2 571,961 + -1.8 571,961 + -0.2 571,961 + -3.0 571,961 + +0.7 571,962 - -0.5 571,962 - +2.8 571,962 - +0.6 571,962 - -1.7 571,975 + +1.1 572,021 + +0.2 572,022 - +0.5 572,101 + GFF530 0.49 +1.7 572,101 + GFF530 0.49 -0.2 572,102 - GFF530 0.50 +0.2 572,102 - GFF530 0.50 -0.5 572,179 + -0.8 572,179 + -0.5 572,179 + -3.7 572,179 + -1.5 572,179 + -1.2 572,179 + -2.9 572,179 + -2.2 572,179 + -0.2 572,180 - -2.2 572,180 - +0.6 572,204 + +2.0 572,204 + +0.5 572,205 - -0.5 572,205 - -0.7 572,205 - -0.8 572,210 + +0.6 572,210 + -2.7 572,210 + -0.7 572,210 + -0.8 572,210 + -1.0 572,210 + -1.7 572,210 + -2.1 572,210 + -1.9 572,210 + -1.2 572,210 + -0.9 572,211 - -0.2 572,211 - -0.3 572,211 - -1.4 572,211 - +0.1 572,211 - -2.3 572,211 - -1.3 572,211 - -0.1 572,211 - -2.0 572,211 - -1.2 572,211 - -0.8 572,311 + GFF531 0.14 +0.3 572,311 + GFF531 0.14 -1.6 572,311 + GFF531 0.14 -0.7 572,311 + GFF531 0.14 -1.8 572,312 - GFF531 0.14 +0.4 572,312 - GFF531 0.14 -0.8 572,312 - GFF531 0.14 -1.7 572,312 - GFF531 0.14 +1.5 572,313 + GFF531 0.14 -1.9 572,313 + GFF531 0.14 -0.7 572,313 + GFF531 0.14 +0.0 572,313 + GFF531 0.14 -2.0 572,313 + GFF531 0.14 -2.0 572,313 + GFF531 0.14 -3.1 572,313 + GFF531 0.14 -1.0 572,313 + GFF531 0.14 -2.7 572,313 + GFF531 0.14 +1.4 572,313 + GFF531 0.14 +1.2 572,313 + GFF531 0.14 -0.9 572,313 + GFF531 0.14 -0.2 572,314 - GFF531 0.14 -1.0 572,314 - GFF531 0.14 -2.0 572,314 - GFF531 0.14 -0.2 572,314 - GFF531 0.14 +0.2 572,315 - GFF531 0.14 -2.8 572,323 - GFF531 0.15 +0.5 572,323 - GFF531 0.15 -1.2 572,400 + GFF531 0.27 -2.1 572,400 + GFF531 0.27 -1.0 572,400 + GFF531 0.27 -1.5 572,400 + GFF531 0.27 +0.6 572,400 + GFF531 0.27 -2.0 572,400 + GFF531 0.27 -0.6 572,400 + GFF531 0.27 -3.1 572,400 + GFF531 0.27 -1.4 572,400 + GFF531 0.27 -2.6 572,400 + GFF531 0.27 -1.8 572,400 + GFF531 0.27 -0.8 572,400 + GFF531 0.27 -2.4 572,400 + GFF531 0.27 -0.6 572,400 + GFF531 0.27 -0.2 572,400 + GFF531 0.27 +0.8 572,401 - GFF531 0.27 -1.7 572,401 - GFF531 0.27 -1.5 572,401 - GFF531 0.27 -0.1 572,401 - GFF531 0.27 -0.5 572,401 - GFF531 0.27 +1.0 572,401 - GFF531 0.27 -0.2 572,401 - GFF531 0.27 +0.2 572,401 - GFF531 0.27 -0.5 572,401 - GFF531 0.27 -0.2 572,401 - GFF531 0.27 +0.6 572,401 - GFF531 0.27 -1.2 572,401 - GFF531 0.27 -1.4 572,401 - GFF531 0.27 -1.1 572,401 - GFF531 0.27 -0.4 572,401 - GFF531 0.27 +1.8 572,401 - GFF531 0.27 -0.1 572,430 + GFF531 0.31 +0.6 572,430 + GFF531 0.31 -0.5 572,430 + GFF531 0.31 -0.3 572,430 + GFF531 0.31 -0.5 572,430 + GFF531 0.31 -2.1 572,430 + GFF531 0.31 -0.0 572,431 - GFF531 0.32 -0.1 572,431 - GFF531 0.32 -0.5 572,431 - GFF531 0.32 +0.1 572,431 - GFF531 0.32 -0.5 572,461 - GFF531 0.36 +0.7 572,634 + GFF531 0.62 -1.3 572,634 + GFF531 0.62 +0.4 572,634 + GFF531 0.62 +0.7 572,634 + GFF531 0.62 -0.8 572,634 + GFF531 0.62 +3.1 572,635 - GFF531 0.62 -2.4 572,635 - GFF531 0.62 -1.2 572,745 + GFF531 0.78 -0.1 572,745 + GFF531 0.78 +0.4 572,745 + GFF531 0.78 +0.1 572,745 + GFF531 0.78 +1.0 572,746 - GFF531 0.78 +0.2 572,746 - GFF531 0.78 -1.0 572,787 + GFF531 0.85 -1.0 572,787 + GFF531 0.85 +0.8 572,787 + GFF531 0.85 -0.9 572,787 + GFF531 0.85 +0.5 572,787 + GFF531 0.85 -2.4 572,787 + GFF531 0.85 +0.3 572,787 + GFF531 0.85 +0.1 572,787 + GFF531 0.85 -0.5 572,787 + GFF531 0.85 -0.6 572,787 + GFF531 0.85 -2.3 572,787 + GFF531 0.85 +0.4 572,787 + GFF531 0.85 -0.8 572,787 + GFF531 0.85 +1.4 572,787 + GFF531 0.85 +2.6 572,787 + GFF531 0.85 -0.5 572,787 + GFF531 0.85 +0.7 572,787 + GFF531 0.85 -2.3 572,787 + GFF531 0.85 +1.1 572,787 + GFF531 0.85 -1.5 572,787 + GFF531 0.85 -0.3 572,788 - GFF531 0.85 +3.2 572,788 - GFF531 0.85 +2.3 572,788 - GFF531 0.85 -1.7 572,788 - GFF531 0.85 +0.5 572,788 - GFF531 0.85 +0.8 572,788 - GFF531 0.85 +0.2 572,788 - GFF531 0.85 +1.0 572,788 - GFF531 0.85 +0.2 572,788 - GFF531 0.85 -1.5 572,788 - GFF531 0.85 -0.1 572,788 - GFF531 0.85 -2.0 572,788 - GFF531 0.85 +0.7 572,788 - GFF531 0.85 -3.7 572,788 - GFF531 0.85 -1.2 572,788 - GFF531 0.85 -1.1 572,788 - GFF531 0.85 -1.0 572,788 - GFF531 0.85 +0.3 572,788 - GFF531 0.85 -0.6 572,788 - GFF531 0.85 -0.7 572,788 - GFF531 0.85 -0.5
Or see this region's nucleotide sequence