Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5288 and GFF5289 overlap by 4 nucleotides GFF5289 and GFF5290 are separated by 137 nucleotides GFF5290 and GFF5291 are separated by 208 nucleotides
GFF5288 - Uncharacterized protein PA4513, at 158,057 to 160,672
GFF5288
GFF5289 - hypothetical protein, at 160,669 to 161,424
GFF5289
GFF5290 - hypothetical protein, at 161,562 to 161,909
GFF5290
GFF5291 - Ferrichrome-iron receptor, at 162,118 to 164,268
GFF5291
Position (kb) 160
161
162 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 159.816 kb on + strand, within GFF5288 at 160.089 kb on - strand, within GFF5288 at 160.295 kb on + strand, within GFF5288 at 160.295 kb on + strand, within GFF5288 at 160.295 kb on + strand, within GFF5288 at 160.296 kb on - strand, within GFF5288 at 160.481 kb on + strand at 160.481 kb on + strand at 160.481 kb on + strand at 160.481 kb on + strand at 160.481 kb on + strand at 160.481 kb on + strand at 160.482 kb on - strand at 160.482 kb on - strand at 160.482 kb on - strand at 160.482 kb on - strand at 160.482 kb on - strand at 160.482 kb on - strand at 160.482 kb on - strand at 160.482 kb on - strand at 160.482 kb on - strand at 160.482 kb on - strand at 160.652 kb on + strand at 160.667 kb on + strand at 160.667 kb on + strand at 160.667 kb on + strand at 160.667 kb on + strand at 160.667 kb on + strand at 160.667 kb on + strand at 160.668 kb on - strand at 160.668 kb on - strand at 160.668 kb on - strand at 160.668 kb on - strand at 160.668 kb on - strand at 160.668 kb on - strand at 160.670 kb on + strand at 160.670 kb on + strand at 160.671 kb on - strand at 160.757 kb on + strand, within GFF5289 at 161.351 kb on + strand at 161.352 kb on - strand at 161.584 kb on + strand at 161.585 kb on - strand at 161.585 kb on - strand at 161.585 kb on - strand at 161.585 kb on - strand at 161.677 kb on - strand, within GFF5290 at 161.677 kb on - strand, within GFF5290 at 161.727 kb on + strand, within GFF5290 at 161.727 kb on + strand, within GFF5290 at 161.727 kb on + strand, within GFF5290 at 161.727 kb on + strand, within GFF5290 at 161.728 kb on - strand, within GFF5290 at 161.728 kb on - strand, within GFF5290 at 161.728 kb on - strand, within GFF5290 at 161.728 kb on - strand, within GFF5290 at 161.920 kb on + strand at 161.921 kb on - strand at 161.924 kb on - strand at 161.924 kb on - strand at 162.012 kb on - strand at 162.027 kb on + strand at 162.027 kb on + strand at 162.028 kb on - strand at 162.040 kb on + strand at 162.040 kb on + strand at 162.040 kb on + strand at 162.041 kb on - strand at 162.041 kb on - strand at 162.041 kb on - strand at 162.041 kb on - strand at 162.074 kb on - strand at 162.258 kb on + strand at 162.258 kb on + strand at 162.258 kb on + strand at 162.259 kb on - strand at 162.259 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 159,816 + GFF5288 0.67 -0.3 160,089 - GFF5288 0.78 -0.6 160,295 + GFF5288 0.86 +1.4 160,295 + GFF5288 0.86 +0.6 160,295 + GFF5288 0.86 +1.3 160,296 - GFF5288 0.86 -1.6 160,481 + -3.1 160,481 + +0.0 160,481 + -1.1 160,481 + +0.7 160,481 + +0.2 160,481 + -1.3 160,482 - +1.2 160,482 - +2.3 160,482 - -0.6 160,482 - +1.6 160,482 - -1.1 160,482 - -1.0 160,482 - -1.8 160,482 - +0.7 160,482 - -1.7 160,482 - +0.9 160,652 + -0.9 160,667 + +1.7 160,667 + -0.2 160,667 + +1.8 160,667 + +1.4 160,667 + +0.8 160,667 + -2.5 160,668 - -1.0 160,668 - +0.5 160,668 - -1.6 160,668 - -1.8 160,668 - -0.6 160,668 - -0.8 160,670 + +1.3 160,670 + +0.8 160,671 - -2.5 160,757 + GFF5289 0.12 -1.4 161,351 + +0.6 161,352 - +0.8 161,584 + -1.1 161,585 - +1.4 161,585 - +1.0 161,585 - -1.4 161,585 - +0.5 161,677 - GFF5290 0.33 -0.1 161,677 - GFF5290 0.33 -0.6 161,727 + GFF5290 0.47 -0.5 161,727 + GFF5290 0.47 -2.2 161,727 + GFF5290 0.47 +0.5 161,727 + GFF5290 0.47 -1.0 161,728 - GFF5290 0.48 -1.4 161,728 - GFF5290 0.48 -2.7 161,728 - GFF5290 0.48 -2.7 161,728 - GFF5290 0.48 +0.8 161,920 + +0.4 161,921 - -1.2 161,924 - -1.1 161,924 - +0.9 162,012 - -1.7 162,027 + -1.1 162,027 + +0.0 162,028 - +2.8 162,040 + -0.1 162,040 + -2.6 162,040 + +1.3 162,041 - +3.1 162,041 - +2.4 162,041 - -0.3 162,041 - -0.1 162,074 - +1.6 162,258 + +1.2 162,258 + -1.4 162,258 + -0.9 162,259 - -1.2 162,259 - +0.8
Or see this region's nucleotide sequence