Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5286 and GFF5287 are separated by 1 nucleotides GFF5287 and GFF5288 are separated by 13 nucleotides
GFF5286 - Ferrichrome-iron receptor, at 154,842 to 157,322
GFF5286
GFF5287 - FIG00455092: hypothetical protein, at 157,324 to 158,043
GFF5287
GFF5288 - Uncharacterized protein PA4513, at 158,057 to 160,672
GFF5288
Position (kb) 157
158
159 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 156.354 kb on + strand, within GFF5286 at 156.355 kb on - strand, within GFF5286 at 156.369 kb on + strand, within GFF5286 at 156.369 kb on + strand, within GFF5286 at 156.600 kb on + strand, within GFF5286 at 156.600 kb on + strand, within GFF5286 at 156.601 kb on - strand, within GFF5286 at 156.601 kb on - strand, within GFF5286 at 156.601 kb on - strand, within GFF5286 at 156.601 kb on - strand, within GFF5286 at 156.601 kb on - strand, within GFF5286 at 156.601 kb on - strand, within GFF5286 at 156.627 kb on + strand, within GFF5286 at 156.627 kb on + strand, within GFF5286 at 156.636 kb on + strand, within GFF5286 at 156.636 kb on + strand, within GFF5286 at 156.636 kb on + strand, within GFF5286 at 156.636 kb on + strand, within GFF5286 at 156.636 kb on + strand, within GFF5286 at 156.636 kb on + strand, within GFF5286 at 156.636 kb on + strand, within GFF5286 at 156.637 kb on - strand, within GFF5286 at 156.637 kb on - strand, within GFF5286 at 156.637 kb on - strand, within GFF5286 at 156.637 kb on - strand, within GFF5286 at 156.637 kb on - strand, within GFF5286 at 156.637 kb on - strand, within GFF5286 at 156.688 kb on - strand, within GFF5286 at 156.688 kb on - strand, within GFF5286 at 156.936 kb on + strand, within GFF5286 at 156.936 kb on + strand, within GFF5286 at 156.936 kb on + strand, within GFF5286 at 156.937 kb on - strand, within GFF5286 at 156.937 kb on - strand, within GFF5286 at 156.942 kb on + strand, within GFF5286 at 156.942 kb on + strand, within GFF5286 at 156.943 kb on - strand, within GFF5286 at 156.943 kb on - strand, within GFF5286 at 156.943 kb on - strand, within GFF5286 at 156.975 kb on + strand, within GFF5286 at 156.975 kb on + strand, within GFF5286 at 156.975 kb on + strand, within GFF5286 at 156.975 kb on + strand, within GFF5286 at 157.032 kb on + strand, within GFF5286 at 157.032 kb on + strand, within GFF5286 at 157.033 kb on - strand, within GFF5286 at 157.092 kb on + strand at 157.092 kb on + strand at 157.092 kb on + strand at 157.092 kb on + strand at 157.092 kb on + strand at 157.093 kb on - strand at 157.093 kb on - strand at 157.132 kb on + strand at 157.132 kb on + strand at 157.132 kb on + strand at 157.132 kb on + strand at 157.143 kb on + strand at 157.144 kb on - strand at 157.170 kb on + strand at 157.171 kb on - strand at 157.171 kb on - strand at 157.185 kb on + strand at 157.186 kb on - strand at 157.239 kb on + strand at 157.239 kb on + strand at 157.239 kb on + strand at 157.239 kb on + strand at 157.239 kb on + strand at 157.239 kb on + strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.240 kb on - strand at 157.242 kb on + strand at 157.242 kb on + strand at 157.263 kb on + strand at 157.263 kb on + strand at 157.263 kb on + strand at 157.264 kb on - strand at 157.264 kb on - strand at 157.264 kb on - strand at 157.264 kb on - strand at 157.320 kb on + strand at 157.321 kb on - strand at 157.321 kb on - strand at 157.729 kb on + strand, within GFF5287 at 157.795 kb on + strand, within GFF5287 at 157.795 kb on + strand, within GFF5287 at 157.795 kb on + strand, within GFF5287 at 157.795 kb on + strand, within GFF5287 at 157.795 kb on + strand, within GFF5287 at 157.795 kb on + strand, within GFF5287 at 157.796 kb on - strand, within GFF5287 at 157.861 kb on + strand, within GFF5287 at 157.861 kb on + strand, within GFF5287 at 157.861 kb on + strand, within GFF5287 at 157.861 kb on + strand, within GFF5287 at 157.861 kb on + strand, within GFF5287 at 157.862 kb on - strand, within GFF5287 at 157.862 kb on - strand, within GFF5287 at 157.862 kb on - strand, within GFF5287 at 157.918 kb on + strand, within GFF5287 at 157.918 kb on + strand, within GFF5287 at 157.918 kb on + strand, within GFF5287 at 157.919 kb on - strand, within GFF5287 at 157.919 kb on - strand, within GFF5287 at 157.919 kb on - strand, within GFF5287 at 157.919 kb on - strand, within GFF5287 at 157.919 kb on - strand, within GFF5287 at 158.378 kb on + strand, within GFF5288 at 158.378 kb on + strand, within GFF5288 at 158.390 kb on + strand, within GFF5288 at 158.390 kb on + strand, within GFF5288 at 158.391 kb on - strand, within GFF5288 at 158.391 kb on - strand, within GFF5288 at 158.543 kb on + strand, within GFF5288 at 158.543 kb on + strand, within GFF5288 at 158.544 kb on - strand, within GFF5288 at 158.666 kb on + strand, within GFF5288 at 158.666 kb on + strand, within GFF5288 at 158.666 kb on + strand, within GFF5288 at 158.666 kb on + strand, within GFF5288 at 158.666 kb on + strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.667 kb on - strand, within GFF5288 at 158.693 kb on + strand, within GFF5288 at 158.693 kb on + strand, within GFF5288 at 158.694 kb on - strand, within GFF5288 at 158.694 kb on - strand, within GFF5288 at 158.694 kb on - strand, within GFF5288
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 156,354 + GFF5286 0.61 +1.1 156,355 - GFF5286 0.61 +1.5 156,369 + GFF5286 0.62 -2.3 156,369 + GFF5286 0.62 -0.3 156,600 + GFF5286 0.71 +0.3 156,600 + GFF5286 0.71 -1.2 156,601 - GFF5286 0.71 -0.2 156,601 - GFF5286 0.71 -1.3 156,601 - GFF5286 0.71 -1.1 156,601 - GFF5286 0.71 +0.9 156,601 - GFF5286 0.71 -0.6 156,601 - GFF5286 0.71 -1.3 156,627 + GFF5286 0.72 +0.8 156,627 + GFF5286 0.72 +0.8 156,636 + GFF5286 0.72 -2.1 156,636 + GFF5286 0.72 -0.6 156,636 + GFF5286 0.72 -0.1 156,636 + GFF5286 0.72 -1.4 156,636 + GFF5286 0.72 -1.7 156,636 + GFF5286 0.72 +2.3 156,636 + GFF5286 0.72 -2.1 156,637 - GFF5286 0.72 +0.4 156,637 - GFF5286 0.72 +0.8 156,637 - GFF5286 0.72 +0.6 156,637 - GFF5286 0.72 +1.3 156,637 - GFF5286 0.72 +1.5 156,637 - GFF5286 0.72 -1.3 156,688 - GFF5286 0.74 -0.3 156,688 - GFF5286 0.74 +0.5 156,936 + GFF5286 0.84 +2.6 156,936 + GFF5286 0.84 -0.9 156,936 + GFF5286 0.84 -2.3 156,937 - GFF5286 0.84 +0.0 156,937 - GFF5286 0.84 -1.3 156,942 + GFF5286 0.85 -1.5 156,942 + GFF5286 0.85 -0.9 156,943 - GFF5286 0.85 -2.1 156,943 - GFF5286 0.85 +1.8 156,943 - GFF5286 0.85 -3.1 156,975 + GFF5286 0.86 -0.6 156,975 + GFF5286 0.86 -0.4 156,975 + GFF5286 0.86 -0.3 156,975 + GFF5286 0.86 +1.3 157,032 + GFF5286 0.88 -1.2 157,032 + GFF5286 0.88 +1.4 157,033 - GFF5286 0.88 -2.4 157,092 + +1.3 157,092 + +1.5 157,092 + -2.6 157,092 + +0.6 157,092 + -1.7 157,093 - -0.1 157,093 - +1.0 157,132 + -3.0 157,132 + +0.1 157,132 + -2.7 157,132 + -0.3 157,143 + -0.0 157,144 - -1.4 157,170 + -0.1 157,171 - -0.1 157,171 - -0.5 157,185 + -0.7 157,186 - -0.9 157,239 + -1.7 157,239 + -1.5 157,239 + -0.4 157,239 + +1.5 157,239 + +1.0 157,239 + -1.1 157,240 - -2.0 157,240 - -1.6 157,240 - +0.3 157,240 - +1.7 157,240 - -0.1 157,240 - +1.5 157,240 - +0.9 157,240 - +0.3 157,240 - +0.8 157,240 - +1.3 157,240 - +0.6 157,240 - -0.3 157,240 - -1.5 157,242 + -0.4 157,242 + -0.6 157,263 + +2.2 157,263 + -0.3 157,263 + +0.3 157,264 - -2.9 157,264 - +0.3 157,264 - +1.2 157,264 - -0.9 157,320 + -0.1 157,321 - -2.2 157,321 - -1.1 157,729 + GFF5287 0.56 -0.9 157,795 + GFF5287 0.65 +0.9 157,795 + GFF5287 0.65 -1.2 157,795 + GFF5287 0.65 -2.2 157,795 + GFF5287 0.65 +0.1 157,795 + GFF5287 0.65 -1.9 157,795 + GFF5287 0.65 -2.1 157,796 - GFF5287 0.66 -0.1 157,861 + GFF5287 0.75 -1.7 157,861 + GFF5287 0.75 -2.4 157,861 + GFF5287 0.75 -0.9 157,861 + GFF5287 0.75 -2.4 157,861 + GFF5287 0.75 -0.4 157,862 - GFF5287 0.75 +0.9 157,862 - GFF5287 0.75 -0.4 157,862 - GFF5287 0.75 -2.2 157,918 + GFF5287 0.82 -0.6 157,918 + GFF5287 0.82 +2.5 157,918 + GFF5287 0.82 -1.2 157,919 - GFF5287 0.83 +3.5 157,919 - GFF5287 0.83 -0.6 157,919 - GFF5287 0.83 -1.6 157,919 - GFF5287 0.83 -1.0 157,919 - GFF5287 0.83 +1.7 158,378 + GFF5288 0.12 +1.7 158,378 + GFF5288 0.12 +5.1 158,390 + GFF5288 0.13 -0.7 158,390 + GFF5288 0.13 -2.1 158,391 - GFF5288 0.13 +0.4 158,391 - GFF5288 0.13 +0.1 158,543 + GFF5288 0.19 -1.2 158,543 + GFF5288 0.19 +0.2 158,544 - GFF5288 0.19 -2.9 158,666 + GFF5288 0.23 -1.3 158,666 + GFF5288 0.23 -0.0 158,666 + GFF5288 0.23 -0.1 158,666 + GFF5288 0.23 +0.3 158,666 + GFF5288 0.23 -2.2 158,667 - GFF5288 0.23 +0.5 158,667 - GFF5288 0.23 -0.3 158,667 - GFF5288 0.23 -2.2 158,667 - GFF5288 0.23 -0.6 158,667 - GFF5288 0.23 +1.3 158,667 - GFF5288 0.23 +0.8 158,667 - GFF5288 0.23 -1.3 158,667 - GFF5288 0.23 -1.3 158,667 - GFF5288 0.23 -0.4 158,667 - GFF5288 0.23 -1.3 158,667 - GFF5288 0.23 +1.2 158,667 - GFF5288 0.23 -0.9 158,667 - GFF5288 0.23 -3.8 158,667 - GFF5288 0.23 -1.7 158,667 - GFF5288 0.23 +1.3 158,667 - GFF5288 0.23 -1.8 158,693 + GFF5288 0.24 -1.0 158,693 + GFF5288 0.24 -0.2 158,694 - GFF5288 0.24 +1.5 158,694 - GFF5288 0.24 -2.0 158,694 - GFF5288 0.24 -3.1
Or see this region's nucleotide sequence