Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5279 and GFF5280 are separated by 11 nucleotides GFF5280 and GFF5281 are separated by 26 nucleotides GFF5281 and GFF5282 are separated by 149 nucleotides
GFF5279 - Fructokinase (EC 2.7.1.4), at 147,379 to 148,347
GFF5279
GFF5280 - Transcriptional regulator of various polyols utilization, AraC family, at 148,359 to 149,315
GFF5280
GFF5281 - Xylulose kinase (EC 2.7.1.17), at 149,342 to 150,808
GFF5281
GFF5282 - Heat shock protein 60 kDa family chaperone GroEL, at 150,958 to 152,610
GFF5282
Position (kb) 149
150
151 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 148.447 kb on - strand at 148.533 kb on + strand, within GFF5280 at 148.533 kb on + strand, within GFF5280 at 148.533 kb on + strand, within GFF5280 at 148.533 kb on + strand, within GFF5280 at 148.534 kb on - strand, within GFF5280 at 148.534 kb on - strand, within GFF5280 at 148.534 kb on - strand, within GFF5280 at 149.175 kb on + strand, within GFF5280 at 149.175 kb on + strand, within GFF5280 at 149.175 kb on + strand, within GFF5280 at 149.175 kb on + strand, within GFF5280 at 149.175 kb on + strand, within GFF5280 at 149.175 kb on + strand, within GFF5280 at 149.176 kb on - strand, within GFF5280 at 149.176 kb on - strand, within GFF5280 at 149.176 kb on - strand, within GFF5280 at 149.176 kb on - strand, within GFF5280 at 149.193 kb on + strand, within GFF5280 at 149.313 kb on + strand at 149.313 kb on + strand at 149.313 kb on + strand at 149.313 kb on + strand at 149.313 kb on + strand at 149.313 kb on + strand at 149.314 kb on - strand at 149.314 kb on - strand at 149.314 kb on - strand at 149.317 kb on + strand at 149.317 kb on + strand at 149.317 kb on + strand at 149.317 kb on + strand at 149.317 kb on + strand at 149.317 kb on + strand at 149.318 kb on - strand at 149.318 kb on - strand at 149.318 kb on - strand at 149.318 kb on - strand at 149.318 kb on - strand at 149.318 kb on - strand at 149.345 kb on + strand at 149.345 kb on + strand at 149.346 kb on - strand at 149.346 kb on - strand at 149.346 kb on - strand at 149.346 kb on - strand at 149.782 kb on + strand, within GFF5281 at 150.350 kb on + strand, within GFF5281 at 150.350 kb on + strand, within GFF5281 at 150.350 kb on + strand, within GFF5281 at 150.350 kb on + strand, within GFF5281 at 150.351 kb on - strand, within GFF5281 at 150.351 kb on - strand, within GFF5281 at 150.443 kb on + strand, within GFF5281 at 150.443 kb on + strand, within GFF5281 at 150.443 kb on + strand, within GFF5281 at 150.444 kb on - strand, within GFF5281 at 150.444 kb on - strand, within GFF5281 at 150.444 kb on - strand, within GFF5281 at 150.444 kb on - strand, within GFF5281 at 150.608 kb on + strand, within GFF5281 at 150.608 kb on + strand, within GFF5281 at 150.608 kb on + strand, within GFF5281 at 150.609 kb on - strand, within GFF5281 at 150.779 kb on + strand at 150.780 kb on - strand at 150.780 kb on - strand at 150.780 kb on - strand at 150.904 kb on + strand at 150.959 kb on + strand at 150.959 kb on + strand at 150.960 kb on - strand at 150.960 kb on - strand at 150.960 kb on - strand at 150.960 kb on - strand at 150.960 kb on - strand at 150.960 kb on - strand at 150.960 kb on - strand at 150.960 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 148,447 - -2.5 148,533 + GFF5280 0.18 +1.1 148,533 + GFF5280 0.18 -1.1 148,533 + GFF5280 0.18 -2.1 148,533 + GFF5280 0.18 -1.5 148,534 - GFF5280 0.18 -1.7 148,534 - GFF5280 0.18 +0.4 148,534 - GFF5280 0.18 -0.4 149,175 + GFF5280 0.85 -0.9 149,175 + GFF5280 0.85 +1.4 149,175 + GFF5280 0.85 -0.3 149,175 + GFF5280 0.85 +0.9 149,175 + GFF5280 0.85 +0.8 149,175 + GFF5280 0.85 +0.7 149,176 - GFF5280 0.85 +0.0 149,176 - GFF5280 0.85 -2.1 149,176 - GFF5280 0.85 -0.9 149,176 - GFF5280 0.85 -1.6 149,193 + GFF5280 0.87 -3.0 149,313 + -1.0 149,313 + -2.2 149,313 + -0.7 149,313 + +0.6 149,313 + +1.3 149,313 + -0.1 149,314 - -0.3 149,314 - -0.7 149,314 - -2.3 149,317 + +1.1 149,317 + +0.6 149,317 + +0.7 149,317 + +0.5 149,317 + -2.0 149,317 + +0.5 149,318 - +1.3 149,318 - -1.4 149,318 - +0.9 149,318 - +1.7 149,318 - -1.8 149,318 - +1.5 149,345 + -0.3 149,345 + -0.3 149,346 - +0.7 149,346 - -1.2 149,346 - -1.0 149,346 - -0.7 149,782 + GFF5281 0.30 +0.6 150,350 + GFF5281 0.69 -0.7 150,350 + GFF5281 0.69 -0.6 150,350 + GFF5281 0.69 -0.5 150,350 + GFF5281 0.69 +1.3 150,351 - GFF5281 0.69 +2.6 150,351 - GFF5281 0.69 -1.6 150,443 + GFF5281 0.75 +0.8 150,443 + GFF5281 0.75 -0.1 150,443 + GFF5281 0.75 -1.1 150,444 - GFF5281 0.75 -1.8 150,444 - GFF5281 0.75 +1.8 150,444 - GFF5281 0.75 +0.5 150,444 - GFF5281 0.75 +0.0 150,608 + GFF5281 0.86 +0.2 150,608 + GFF5281 0.86 -1.1 150,608 + GFF5281 0.86 +1.3 150,609 - GFF5281 0.86 -0.1 150,779 + -0.7 150,780 - -1.3 150,780 - +0.5 150,780 - -0.1 150,904 + -0.3 150,959 + -0.3 150,959 + +1.8 150,960 - +0.3 150,960 - -1.2 150,960 - -0.9 150,960 - -1.7 150,960 - +0.7 150,960 - -0.1 150,960 - -1.9 150,960 - -0.6
Or see this region's nucleotide sequence