Strain Fitness in Variovorax sp. SCN45 around GFF5263

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
128,097	+		GFF5262	0.12	-2.1
128,097	+		GFF5262	0.12	-0.3
128,098	-		GFF5262	0.12	-1.9
128,098	-		GFF5262	0.12	+0.2
128,105	+		GFF5262	0.13	+1.4
128,106	-		GFF5262	0.13	-0.4
128,259	+		GFF5262	0.28	-0.7
128,259	+		GFF5262	0.28	+0.5
128,259	+		GFF5262	0.28	-2.1
128,259	+		GFF5262	0.28	-0.7
128,259	+		GFF5262	0.28	-0.3
128,259	+		GFF5262	0.28	+2.3
128,259	+		GFF5262	0.28	-0.7
128,259	+		GFF5262	0.28	+2.0
128,259	+		GFF5262	0.28	+1.8
128,260	-		GFF5262	0.28	-0.9
128,260	-		GFF5262	0.28	-1.0
128,260	-		GFF5262	0.28	-1.1
128,260	-		GFF5262	0.28	+1.1
128,322	+		GFF5262	0.34	-1.7
128,322	+		GFF5262	0.34	+0.7
128,322	+		GFF5262	0.34	-1.3
128,323	-		GFF5262	0.34	+2.9
128,323	-		GFF5262	0.34	-0.7
128,340	+		GFF5262	0.36	-0.2
128,340	+		GFF5262	0.36	+2.3
128,341	-		GFF5262	0.36	-0.7
128,364	+		GFF5262	0.38	+0.7
128,364	+		GFF5262	0.38	-1.7
128,364	+		GFF5262	0.38	-0.2
128,364	+		GFF5262	0.38	-1.4
128,364	+		GFF5262	0.38	-1.2
128,364	+		GFF5262	0.38	-2.4
128,365	-		GFF5262	0.38	-0.6
128,365	-		GFF5262	0.38	+0.4
128,365	-		GFF5262	0.38	-1.3
128,365	-		GFF5262	0.38	-0.3
128,365	-		GFF5262	0.38	-0.9
128,436	+		GFF5262	0.45	-0.1
128,437	-		GFF5262	0.45	+0.3
128,437	-		GFF5262	0.45	+0.2
128,484	+		GFF5262	0.50	+1.3
128,484	+		GFF5262	0.50	-0.7
128,484	+		GFF5262	0.50	+0.8
128,484	+		GFF5262	0.50	-0.6
128,485	-		GFF5262	0.50	+0.7
128,485	-		GFF5262	0.50	-1.9
128,485	-		GFF5262	0.50	-0.4
128,485	-		GFF5262	0.50	-0.7
128,538	+		GFF5262	0.55	-1.0
128,538	+		GFF5262	0.55	+0.3
128,571	+		GFF5262	0.59	+0.2
128,571	+		GFF5262	0.59	-0.8
128,571	+		GFF5262	0.59	+1.8
128,572	-		GFF5262	0.59	+1.0
128,572	-		GFF5262	0.59	+2.3
128,775	+		GFF5262	0.79	+0.9
128,775	+		GFF5262	0.79	+0.7
128,776	-		GFF5262	0.79	-0.2
128,776	-		GFF5262	0.79	+0.6
128,904	+				-1.9
128,904	+				+0.3
128,904	+				-3.0
128,905	-				+0.8
128,905	-				-0.1
128,905	-				-1.1
128,910	+				-2.1
128,911	-				-0.7
128,911	-				+0.6
128,919	+				+0.5
128,919	+				-2.5
128,919	+				+0.8
128,920	-				-1.7
128,988	+				+0.4
128,988	+				+0.6
128,989	-				+1.6
128,989	-				-1.4
129,099	+				-2.0
129,100	-				+0.1
129,100	-				-2.4
129,117	+				-1.0
129,118	-				-0.1
129,118	-				-0.1
129,142	-				-2.5
129,225	+		GFF5263	0.10	+1.0
129,954	+		GFF5263	0.42	-1.7
129,954	+		GFF5263	0.42	-1.1
129,954	+		GFF5263	0.42	+1.5
129,954	+		GFF5263	0.42	-0.2
129,955	-		GFF5263	0.42	-2.7
129,955	-		GFF5263	0.42	-0.7
129,955	-		GFF5263	0.42	-2.1
130,254	+		GFF5263	0.56	-1.1
130,255	-		GFF5263	0.56	+1.0
130,350	+		GFF5263	0.60	-0.3
130,351	-		GFF5263	0.60	-1.8
130,422	+		GFF5263	0.63	-1.3
130,422	+		GFF5263	0.63	+0.5
130,422	+		GFF5263	0.63	-0.8
130,422	+		GFF5263	0.63	+2.0
130,422	+		GFF5263	0.63	-0.7
130,422	+		GFF5263	0.63	+0.1
130,422	+		GFF5263	0.63	+0.6
130,423	-		GFF5263	0.63	-1.0
130,423	-		GFF5263	0.63	-0.7
130,423	-		GFF5263	0.63	+0.3
130,423	-		GFF5263	0.63	-1.3
130,423	-		GFF5263	0.63	-1.1
130,423	-		GFF5263	0.63	-0.6
130,423	-		GFF5263	0.63	-0.2
130,423	-		GFF5263	0.63	-1.4
130,423	-		GFF5263	0.63	-2.6
130,464	+		GFF5263	0.65	-0.3
130,464	+		GFF5263	0.65	-1.1
130,465	-		GFF5263	0.65	-3.7
130,512	+		GFF5263	0.67	-0.1
130,513	-		GFF5263	0.67	-1.0
130,513	-		GFF5263	0.67	-3.3
130,513	-		GFF5263	0.67	+2.3
130,767	+		GFF5263	0.78	-1.0
130,767	+		GFF5263	0.78	-1.4
130,767	+		GFF5263	0.78	-1.1
130,768	-		GFF5263	0.78	+0.4
130,768	-		GFF5263	0.78	-0.7
130,768	-		GFF5263	0.78	-0.7
130,768	-		GFF5263	0.78	-0.1
130,768	-		GFF5263	0.78	-1.8
130,768	-		GFF5263	0.78	-0.2
130,768	-		GFF5263	0.78	-1.2
130,768	-		GFF5263	0.78	+1.3
131,001	+		GFF5263	0.88	-1.6
131,002	-		GFF5263	0.88	+0.2
131,002	-		GFF5263	0.88	-0.1
131,079	+				+0.7
131,079	+				-3.1
131,079	+				-0.7
131,079	+				+1.2
131,079	+				-0.6
131,079	+				+0.9
131,079	+				-0.5
131,079	+				+4.1
131,079	+				+1.6
131,079	+				+0.7
131,079	+				+1.3
131,080	-				-1.2
131,080	-				-2.0
131,080	-				-1.4
131,080	-				+0.9
131,080	-				-1.7
131,080	-				-0.1
131,080	-				-1.5
131,080	-				+0.6
131,080	-				-1.9
131,080	-				+0.5
131,109	+				-2.1
131,127	+				-0.3
131,127	+				+0.4
131,284	+				+0.5
131,285	-				+0.3
131,285	-				+0.9
131,285	-				+0.7
131,522	+		GFF5264	0.25	+0.3
131,522	+		GFF5264	0.25	+0.5
131,522	+		GFF5264	0.25	-1.8
131,522	+		GFF5264	0.25	+1.3
131,522	+		GFF5264	0.25	-0.9
131,522	+		GFF5264	0.25	-0.7
131,522	+		GFF5264	0.25	+0.8
131,522	+		GFF5264	0.25	-1.8
131,522	+		GFF5264	0.25	-1.9
131,522	+		GFF5264	0.25	+1.5
131,522	+		GFF5264	0.25	+0.5
131,522	+		GFF5264	0.25	-1.7
131,522	+		GFF5264	0.25	-1.4
131,523	-		GFF5264	0.25	+3.1
131,523	-		GFF5264	0.25	+0.0
131,523	-		GFF5264	0.25	+0.6
131,523	-		GFF5264	0.25	-0.2
131,523	-		GFF5264	0.25	-2.0
131,565	-		GFF5264	0.29	-1.3
131,837	+		GFF5264	0.55	-0.8
131,837	+		GFF5264	0.55	-1.3
131,837	+		GFF5264	0.55	+0.2
131,838	-		GFF5264	0.55	+0.1
131,838	-		GFF5264	0.55	-3.6
131,838	-		GFF5264	0.55	-1.5
131,936	+		GFF5264	0.64	+0.7
131,936	+		GFF5264	0.64	+0.7
131,936	+		GFF5264	0.64	-0.7
131,936	+		GFF5264	0.64	-0.4
131,936	+		GFF5264	0.64	-1.5
131,936	+		GFF5264	0.64	-1.1
131,936	+		GFF5264	0.64	-0.9
131,936	+		GFF5264	0.64	+0.7
131,937	-		GFF5264	0.64	-2.3
131,937	-		GFF5264	0.64	-1.3
131,937	-		GFF5264	0.64	+0.7
132,161	+		GFF5264	0.86	-1.1
132,162	-		GFF5264	0.86	+1.3
132,176	+		GFF5264	0.87	-0.1
132,177	-		GFF5264	0.87	+1.3
132,182	+		GFF5264	0.88	-0.3
132,182	+		GFF5264	0.88	-1.2
132,183	-		GFF5264	0.88	-0.7
132,183	-		GFF5264	0.88	-0.9
132,183	-		GFF5264	0.88	+1.0
132,183	-		GFF5264	0.88	+0.8